Trna Nucleotidyltransferase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-162   ALA-163  6.8 6.6 20.8 -12.4 100.1 90.9 -64.0
 ALA-163   GLU-164  6.1 5.8 -7.1 -4.3 56.6 59.6 51.0
 GLU-164   TYR-165  9.1 8.9 13.5 5.0 144.5 144.2 -106.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-166   VAL-167  8.8 8.4 -12.6 14.5 87.1 85.0 4.9
 VAL-167   ARG-168  5.5 5.2 18.0 -13.1 106.5 109.1 -12.4
 ARG-168   GLY-169  4.1 4.2 -7.2 0.9 65.5 65.9 22.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-255   PRO-256  17.6 17.4 -9.0 16.3 55.0 53.5 -30.0
 PRO-256   LYS-257  15.0 15.1 -11.5 25.6 22.4 23.2 -126.4
 LYS-257   HIS-258  14.5 14.1 17.7 46.5 132.2 137.5 -477.5
 HIS-258   PRO-259  15.8 15.8 10.1 -13.4 150.2 112.7 127.4
 PRO-259   LEU-260  13.3 15.2 171.7 127.9 149.0 147.8 611.1
 LEU-260   GLU-261  13.1 14.3 174.8 -176.0 135.5 132.9 -27.6
 GLU-261   ILE-262  14.1 15.3 -98.3 124.5 31.5 26.9 -224.9
 ILE-262   GLU-263  13.7 13.6 -36.8 -12.4 35.9 46.5 372.9
 GLU-263   PRO-264  13.9 13.8 9.0 -7.0 102.8 110.9 -77.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees