Pyranose Oxidase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-375   VAL-376  6.6 6.9 -6.4 5.5 74.2 73.3 54.2
 VAL-376   LYS-377  3.5 3.8 -3.4 4.1 100.3 101.9 6.5
 LYS-377   SER-378  4.9 5.5 1.3 -8.7 33.0 32.7 -44.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 HIS-419   GLN-420  8.0 8.0 -8.6 6.1 73.0 78.1 -12.3
 GLN-420   GLU-421  10.4 10.5 -4.6 15.4 120.6 131.8 39.0
 GLU-421   ASP-422  9.8 9.5 -9.4 -7.5 76.0 72.6 21.7
 ASP-422   PRO-423  6.7 6.8 -3.6 -1.7 35.1 33.0 29.1
 PRO-423   LEU-424  8.2 8.5 6.7 -2.7 138.4 138.5 -27.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees