Glycerol Dehydrogenase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-122   ASP-123  5.5 5.5 -3.1 -4.4 62.9 60.7 28.3
 ASP-123   ALA-124  2.4 2.4 -2.1 -5.3 14.3 9.5 49.1
 ALA-124   PRO-125  4.6 4.3 4.3 -0.1 113.4 113.7 -28.1
 PRO-125   THR-126  5.5 5.5 -2.7 5.1 48.7 49.4 -29.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASN-148   PRO-149  4.3 4.0 -8.7 0.1 90.4 90.5 -4.8
 PRO-149   ASP-150  7.3 7.3 -4.1 5.5 91.4 93.2 -1.2
 ASP-150   LEU-151  10.6 10.6 -1.9 1.9 29.9 29.4 -5.6
 LEU-151   VAL-152  12.2 12.1 -2.3 2.4 45.8 45.6 2.1
 VAL-152   LEU-153  10.7 10.6 -1.5 -0.3 46.3 44.2 6.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees