Guanylate Kinase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-33   TYR-34  12.2 12.4 -119.0 48.8 55.7 65.4 244.6
 TYR-34   LYS-35  9.8 9.6 8.1 -3.3 89.5 89.2 -16.1
 LYS-35   TYR-36  8.1 8.4 -10.5 20.0 13.2 16.4 -79.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASP-95   GLU-96  2.7 2.6 3.4 -6.3 141.4 144.4 13.3
 GLU-96   GLY-97  1.1 0.7 6.0 -2.4 94.1 92.3 -16.2
 GLY-97   HIS-98  3.1 3.3 0.8 -7.9 54.0 55.9 -33.9
 HIS-98   ASP-99  4.6 4.8 3.7 4.2 25.3 18.9 68.4
 ASP-99   VAL-100  5.9 5.9 10.1 -6.9 52.6 58.7 -6.4
 VAL-100   PHE-101  4.6 4.5 4.6 7.8 151.8 155.1 -80.3
 VAL-100   PHE-101  4.6 4.5 4.6 7.8 151.8 155.1 -80.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-100   PHE-101  4.6 4.5 4.6 7.8 151.8 155.1 -80.3
 VAL-100   PHE-101  4.6 4.5 4.6 7.8 151.8 155.1 -80.3
 PHE-101   LEU-102  6.7 6.6 23.6 -13.3 138.5 134.5 70.8
 LEU-102   GLU-103  5.1 5.4 -7.6 -7.2 29.7 41.0 114.4
 GLU-103   ILE-104  6.6 7.6 -12.3 -17.2 54.0 46.6 69.0
 ILE-104   GLU-105  4.0 5.6 -5.9 5.4 20.6 27.6 -20.0
 GLU-105   VAL-106  3.8 4.9 20.8 -15.3 98.4 95.8 -12.0
 VAL-106   GLU-107  3.8 2.9 14.9 2.2 89.9 90.2 16.0
 GLU-107   GLY-108  2.3 0.8 -29.0 5.1 143.6 158.2 -185.1
 GLY-108   ALA-109  1.8 1.8 -24.9 6.1 131.0 122.3 -87.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees