Guanylate Kinase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 TYR-31   ASP-32  7.7 7.7 -5.0 5.4 122.4 125.6 2.1
 ASP-32   THR-33  6.2 6.1 -2.3 4.1 92.1 89.5 4.6
 THR-33   GLN-34  2.6 2.6 26.1 -33.4 109.2 116.4 58.0
 GLN-34   VAL-35  2.9 3.0 -15.0 22.6 97.7 90.1 -6.1
 VAL-35   SER-36  4.9 5.0 0.5 -3.7 158.4 157.7 8.9
 SER-36   VAL-37  6.5 6.3 31.3 -36.6 110.7 114.5 43.8
 VAL-37   SER-38  8.5 8.5 -1.3 0.3 54.0 54.3 2.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-85   ARG-86  9.6 9.7 -4.2 3.6 76.1 75.1 7.0
 ARG-86   GLU-87  9.4 9.5 -3.4 4.8 110.1 106.3 -0.8
 GLU-87   ALA-88  6.3 6.4 -23.5 21.5 58.9 60.5 -11.0
 ALA-88   ILE-89  4.7 4.5 -0.1 -8.5 35.7 30.2 79.2
 ILE-89   GLU-90  4.7 4.6 6.3 -4.7 71.7 76.1 -41.9
 GLU-90   GLN-91  5.5 5.6 2.9 5.0 76.4 79.0 24.0
 GLN-91   VAL-92  2.5 2.7 -20.9 19.8 38.9 32.1 9.8
 VAL-92   LEU-93  1.7 1.8 -23.8 18.4 57.6 62.4 37.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees