Trichodiene Synthase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-21   TYR-22  14.7 14.2 15.1 6.6 30.1 43.6 140.0
 TYR-22   ARG-23  12.3 11.1 11.9 -15.2 38.3 23.8 -17.4
 ARG-23   ASP-24  14.0 11.4 -37.3 -55.7 137.2 106.8 -382.3
 ASP-24   SER-25  13.4 9.2 -41.8 7.1 81.9 143.9 -38.2
 SER-25   ASN-26  13.4 11.4 -156.2 30.8 155.7 92.3 1064.8
 ASN-26   TYR-27  14.5 10.1 -46.4 -59.8 108.8 151.0 -702.5
 TYR-27   THR-28  11.2 9.7 62.4 -9.8 45.4 39.1 207.3
 THR-28   ARG-29  9.8 9.9 -12.8 11.5 98.3 103.9 -75.4
 ARG-29   GLU-30  6.3 6.4 4.8 -0.3 60.8 66.6 37.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASN-225   ASP-226  4.0 4.4 9.9 -0.9 65.6 61.7 43.0
 ASP-226   LEU-227  6.7 6.9 7.8 -12.8 104.9 108.5 -18.4
 LEU-227   MET-228  8.0 8.3 -1.0 -1.0 20.5 15.9 20.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PHE-234   ASP-235  17.7 17.6 -4.7 1.9 87.9 96.8 -42.6
 ASP-235   ASP-236  20.9 20.7 -12.0 -9.8 103.3 106.7 -82.1
 ASP-236   GLU-237  19.9 19.5 30.6 7.8 141.2 142.7 -230.6
 GLU-237   ARG-238  22.7 21.6 -40.3 25.8 84.5 67.7 75.9
 ARG-238   ASP-239  21.8 19.6 11.6 -8.9 124.1 123.5 14.1
 ASP-239   GLN-240  18.3 16.6 137.2 179.1 154.7 142.3 322.5
 GLN-240   ILE-241  18.9 17.7 -39.7 45.1 46.4 36.2 -25.3
 ILE-241   SER-242  16.0 16.0 50.2 -67.6 75.4 68.3 -52.3
 SER-242   LEU-243  12.7 12.5 1.1 -3.3 146.9 139.9 15.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 TRP-298   HIS-299  1.3 1.4 -3.2 3.0 108.9 111.6 12.1
 HIS-299   LEU-300  4.4 4.4 1.1 -1.1 125.7 123.0 -1.9
 LEU-300   CYS-301  6.6 6.7 2.8 -5.0 154.5 154.0 1.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-332   ALA-333  7.9 7.9 16.4 -7.0 32.5 35.7 62.2
 ALA-333   ASN-334  7.4 7.6 7.4 -17.5 40.0 38.8 -47.8
 ASN-334   VAL-335  8.6 8.5 21.2 3.7 81.9 90.5 15.4
 VAL-335   GLY-336  6.4 6.2 -25.4 -4.5 74.2 88.1 16.1
 GLY-336   ALA-337  3.2 2.8 28.4 -11.1 63.8 66.8 48.3
 ALA-337   VAL-338  4.2 4.3 -40.6 44.4 145.5 147.4 4.8
 VAL-338   SER-339  2.0 2.0 -4.6 2.1 99.8 102.9 8.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees