Nucleoside Diphosphate Kinase II

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-118   MET-119  5.0 5.1 -4.0 4.6 108.4 105.8 9.5
 MET-119   PHE-120  2.2 2.1 9.5 -4.1 66.8 67.7 78.2
 PHE-120   GLN-121  2.7 2.6 -5.5 8.8 110.5 110.3 3.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PRO-151   VAL-152  4.3 4.1 1.0 19.2 10.7 19.3 320.8
 VAL-152   VAL-153  3.3 3.4 4.3 2.3 78.6 77.2 38.3
 VAL-153   CYS-154  1.1 1.4 -15.1 13.0 141.6 142.9 -35.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-206   ARG-207  11.1 11.2 -11.8 -0.1 137.6 136.8 -154.6
 ARG-207   GLU-208  12.4 12.6 16.9 -11.1 31.8 36.5 80.8
 GLU-208   ILE-209  9.6 9.6 4.3 -7.5 61.7 56.3 -7.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-211   TRP-212  12.2 12.1 17.6 -17.5 141.0 134.2 -7.1
 TRP-212   PHE-213  8.9 8.7 8.7 -18.1 114.7 113.1 23.8
 PHE-213   LYS-214  9.9 9.9 4.4 -4.0 105.9 100.8 11.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees