Meso-Diaminopimelate D-Dehydrogenase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLN-140   HIS-141  6.3 6.4 -0.1 -1.3 52.5 52.7 0.6
 HIS-141   THR-142  4.3 4.3 0.2 -4.1 154.7 154.5 2.9
 THR-142   PHE-143  4.7 4.8 24.1 -31.6 121.4 124.1 24.1
 PHE-143   TRP-144  1.7 2.1 -3.1 -8.0 17.6 17.6 16.1
 TRP-144   GLY-145  2.0 2.6 -14.1 13.2 56.8 60.8 14.2
 GLY-145   PRO-146  1.1 0.4 -3.7 -17.2 101.7 99.9 44.7
 PRO-146   GLY-147  3.3 2.5 2.0 -0.3 133.7 141.8 -10.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-169   LEU-170  4.7 4.8 1.4 7.7 109.0 111.2 -6.0
 LEU-170   PRO-171  4.7 5.1 -13.7 -18.3 0.5 4.4 68.9
 PRO-171   SER-172  4.0 3.8 13.3 -12.5 110.3 116.7 3.1
 SER-172   GLU-173  7.1 6.2 -13.6 3.2 64.1 71.2 9.3
 GLU-173   ASP-174  8.9 7.2 -4.5 9.1 10.9 13.0 -9.8
 ASP-174   ALA-175  9.7 8.4 -9.8 8.0 58.7 55.5 4.3
 ALA-175   LEU-176  6.0 4.9 1.4 1.0 90.2 84.8 1.9
 LEU-176   GLU-177  5.9 4.4 1.4 -7.8 139.2 131.0 13.3
 GLU-177   LYS-178  8.8 7.6 5.7 0.7 156.3 160.9 -15.7
 LYS-178   ALA-179  6.9 5.9 -3.0 3.6 80.2 76.5 1.8
 ALA-179   ARG-180  4.4 3.6 -2.9 2.3 77.6 78.8 0.4
 ARG-180   ARG-181  8.1 7.3 8.6 -20.3 162.4 156.2 24.1
 ARG-181   GLY-182  8.5 7.8 29.3 -32.7 128.7 130.6 3.5
 GLY-182   GLU-183  5.2 4.6 13.1 0.2 112.7 113.4 -8.5
 GLU-183   ALA-184  4.5 4.2 -21.6 9.8 132.1 122.0 -12.1
 ALA-184   GLY-185  2.8 2.6 -14.1 24.8 75.5 68.8 -15.7
 GLY-185   ASP-186  2.2 2.1 174.9 169.6 81.8 82.4 -32.6
 ASP-186   LEU-187  5.8 5.8 0.0 -20.5 145.5 141.2 -35.0
 LEU-187   THR-188  6.4 5.9 -6.2 -13.7 123.7 131.8 -37.0
 THR-188   GLY-189  8.6 7.4 11.3 -3.0 21.4 21.3 22.4
 GLY-189   LYS-190  8.0 6.8 -10.7 4.8 123.2 116.5 -5.9
 LYS-190   GLN-191  10.4 9.8 -11.9 23.3 84.4 76.9 0.8
 GLN-191   THR-192  8.8 9.1 -4.6 -19.7 100.1 107.8 -9.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-237   GLU-238  7.4 6.9 12.9 19.1 152.7 154.3 -69.9
 GLU-238   HIS-239  7.2 7.3 -33.8 19.7 48.7 50.9 29.2
 HIS-239   THR-240  5.2 4.9 37.0 5.0 67.4 65.2 45.5
 THR-240   GLY-241  2.2 1.4 -62.0 30.6 72.2 53.9 42.3
 GLY-241   MET-242  1.2 1.5 -17.4 0.3 42.3 44.1 32.3
 MET-242   PRO-243  2.7 2.7 -1.0 -0.3 38.2 38.9 2.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees