Tryptophan-Trna Ligase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-3   ILE-4  5.7 5.5 -9.6 7.5 123.0 122.5 25.6
 ILE-4   PHE-5  6.3 6.5 -15.9 26.3 146.3 149.0 49.8
 PHE-5   SER-6  8.4 8.6 -22.6 41.2 121.2 130.5 123.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-8   GLN-9  11.1 9.8 -13.1 1.5 37.7 37.6 37.3
 GLN-9   PRO-10  12.9 12.3 -16.5 23.5 32.3 33.4 -11.9
 PRO-10   SER-11  11.2 10.5 61.8 -49.0 133.0 129.1 -89.4
 SER-11   GLY-12  14.4 11.3 -4.0 -115.6 52.1 60.6 452.4
 GLY-12   VAL-13  12.9 8.2 149.2 -24.9 69.3 87.6 239.7
 VAL-13   ILE-14  10.9 10.9 -5.3 -74.1 141.2 159.2 -461.6
 ILE-14   THR-15  11.7 11.8 -26.8 34.0 81.7 87.4 -9.0
 THR-15   ILE-16  14.8 15.1 -25.9 13.6 139.3 134.7 -31.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASN-34   CYS-35  2.6 2.1 -10.0 21.5 49.6 42.7 -15.5
 CYS-35   TYR-36  3.1 2.5 -4.2 0.7 42.4 48.4 4.1
 TYR-36   PHE-37  5.6 5.3 -11.2 11.2 53.0 42.7 -1.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-60   LEU-61  3.7 3.0 -13.1 7.6 18.8 19.8 20.9
 LEU-61   ALA-62  5.2 4.6 -18.5 14.1 53.4 54.9 37.1
 ALA-62   ALA-63  2.4 2.0 3.9 -6.1 81.9 79.7 -4.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-64   TYR-65  4.6 4.3 0.9 -11.2 5.4 7.9 -62.8
 TYR-65   LEU-66  3.4 3.5 13.9 4.6 78.2 74.8 89.0
 LEU-66   ALA-67  3.5 4.0 -16.3 14.7 74.2 77.0 3.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-73   GLN-74  7.8 8.4 -26.4 29.6 32.8 35.4 22.7
 GLN-74   ALA-75  5.0 5.7 -22.0 26.6 91.2 91.4 29.7
 ALA-75   THR-76  2.6 2.9 7.4 -10.1 49.4 56.1 -9.3
 THR-76   LEU-77  5.1 5.0 -12.5 5.1 134.5 138.6 -22.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-173   ALA-174  14.7 15.0 3.5 -19.5 33.6 37.7 -69.7
 ALA-174   ARG-175  15.4 15.6 -28.9 31.6 76.0 80.9 6.3
 ARG-175   ILE-176  14.2 14.5 73.7 -14.3 34.7 30.2 300.6
 ILE-176   PRO-177  16.8 16.1 88.2 -46.1 98.2 70.6 34.8
 PRO-177   LYS-178  17.4 16.0 -145.7 156.4 75.9 55.7 -120.0
 LYS-178   VAL-179  20.7 17.7 -0.1 -165.0 143.3 110.1 -708.5
 VAL-179   GLY-180  21.7 20.5 25.5 28.4 38.8 90.3 335.2
 GLY-180   ALA-181  20.8 22.7 31.7 -86.0 92.3 33.2 -141.9
 ALA-181   ARG-182  20.0 21.8 -62.2 178.8 133.8 130.5 471.8
 ARG-182   ILE-183  22.4 22.8 -7.3 3.9 134.0 146.4 -21.7
 ILE-183   MET-184  22.6 22.8 -9.7 0.9 129.6 121.6 -1.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 HIS-289   TRP-290  8.2 8.9 12.1 -6.7 74.4 67.6 8.5
 TRP-290   MET-291  5.3 6.1 -3.9 6.7 44.0 47.4 -31.9
 MET-291   GLU-292  3.1 3.8 -17.6 9.3 51.7 51.1 28.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees