Phosphoenolpyruvate Carboxykinase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-89   GLY-90  8.0 6.9 113.9 115.1 112.2 156.2 439.5
 GLY-90   LYS-91  9.9 7.4 -144.3 -136.3 49.7 92.3 -114.6
 LYS-91   ASN-92  8.4 8.4 61.7 11.6 150.5 145.5 -291.0
 ASN-92   ASP-93  11.3 11.4 -9.9 0.6 100.0 99.0 -26.5
 ASP-93   ASN-94  15.0 15.1 0.8 -4.2 95.4 93.0 8.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-235   ASN-236  5.5 6.2 4.2 -7.0 161.7 162.8 15.5
 ASN-236   VAL-237  5.1 5.8 -3.8 5.2 56.2 59.3 9.1
 VAL-237   GLY-238  2.9 3.5 -2.9 3.6 43.6 44.5 4.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-251   SER-252  15.6 16.1 33.2 -23.4 63.2 82.3 -20.9
 SER-252   GLY-253  12.7 13.5 20.3 30.7 10.5 19.5 264.7
 GLY-253   LYS-254  13.7 13.4 -21.1 -5.2 123.6 125.3 -85.4
 LYS-254   THR-255  10.5 11.0 13.1 -18.9 149.0 146.3 27.5
 LYS-254   THR-255  10.5 11.0 13.1 -18.9 149.0 146.3 27.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-254   THR-255  10.5 11.0 13.1 -18.9 149.0 146.3 27.5
 LYS-254   THR-255  10.5 11.0 13.1 -18.9 149.0 146.3 27.5
 THR-255   THR-256  12.6 13.9 -1.5 0.0 41.9 50.8 -4.1
 THR-256   LEU-257  14.3 15.4 4.2 -10.3 118.1 119.7 25.5
 LEU-257   SER-258  11.6 12.4 2.8 1.6 122.4 128.1 -3.0
 SER-258   THR-259  9.2 10.2 -17.9 7.9 35.0 32.7 53.5
 THR-259   ASP-260  11.9 13.1 -21.1 15.0 48.1 60.5 -23.6
 ASP-260   PRO-261  10.9 12.4 1.5 1.3 153.2 160.4 -13.9
 PRO-261   ALA-262  11.8 13.1 -2.8 10.2 59.2 59.2 -22.0
 ALA-262   ARG-263  8.5 10.1 -10.3 6.3 117.1 105.8 7.1
 ARG-263   ARG-264  6.5 7.7 29.3 -15.8 78.6 89.7 4.8
 ARG-264   LEU-265  7.7 8.2 -18.8 12.5 161.4 161.0 -34.9
 LEU-265   ILE-266  9.2 9.8 1.4 -9.3 84.9 83.8 11.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-356   VAL-357  4.6 4.0 -1.5 -4.6 134.8 137.3 -28.6
 VAL-357   ILE-358  3.1 2.6 -10.4 10.5 112.9 117.6 20.6
 ILE-358   PHE-359  4.5 4.9 7.2 -1.3 34.7 35.3 20.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PHE-405   SER-406  6.2 6.6 -12.8 9.1 99.1 101.7 25.0
 SER-406   ALA-407  6.0 6.5 -8.7 8.4 113.1 118.2 2.3
 ALA-407   CYS-408  3.6 3.8 1.0 5.8 22.8 21.0 33.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-434   GLN-435  8.7 7.7 -9.8 9.3 128.3 129.6 -3.5
 GLN-435   ALA-436  9.0 8.2 12.0 -8.6 62.2 63.1 17.2
 ALA-436   TYR-437  7.2 6.6 2.1 -2.5 79.5 81.4 7.6
 TYR-437   LEU-438  8.5 8.2 7.2 -8.2 49.4 49.8 6.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees