RNA Uridylyl Transferase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 HIS-28   VAL-29  12.7 12.7 86.8 -31.7 28.6 34.2 217.2
 VAL-29   ASP-30  9.9 10.3 19.7 9.5 54.7 41.0 130.6
 ASP-30   ALA-31  11.0 11.7 12.3 -16.0 65.2 61.0 -24.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-48   LEU-49  8.5 7.3 13.4 -13.9 61.4 57.4 -32.9
 LEU-49   TYR-50  7.0 6.4 -24.1 19.7 144.0 138.1 -47.0
 TYR-50   THR-51  4.3 3.6 0.2 -3.5 55.3 50.6 10.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-57   TYR-58  3.5 3.9 2.5 5.6 164.0 165.3 -38.2
 TYR-58   GLY-59  2.2 2.7 -2.2 2.7 75.7 77.8 30.4
 GLY-59   VAL-60  1.9 1.4 1.1 -13.1 127.6 121.2 41.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-90   LYS-91  7.0 8.3 -1.2 -11.9 123.3 123.0 -36.5
 LYS-91   GLY-92  9.8 10.8 -17.9 2.7 61.7 63.3 34.8
 GLY-92   LEU-93  9.8 10.9 21.1 -0.6 75.8 84.4 37.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLN-94   ALA-95  7.7 8.0 7.9 -14.9 90.4 94.9 -27.9
 ALA-95   ASP-96  11.4 11.7 8.2 46.4 76.0 63.0 85.4
 ASP-96   ILE-97  11.4 11.0 -101.2 65.8 78.7 59.3 43.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-138   ALA-139  7.6 7.7 1.6 -7.5 124.8 123.0 39.0
 ALA-139   TYR-140  5.2 5.1 -0.8 11.2 68.7 65.8 -13.4
 TYR-140   ARG-141  1.9 2.4 -1.7 -9.3 115.2 112.4 -1.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees