/Hiv-1 Protease (Isolate Hxb2)

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name /Hiv-1 Protease (Isolate Hxb2)
  Conformer 1
(PDB) 		3phv  
  Conformer 2
(PDB) 		4phv (B)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 62 0.71   4 - 32   34 - 39   60 - 75   86 - 96
2 31 1.08   33 - 33   40 - 59   76 - 85

Sequence


           _____________________________31______39__________________59______________75________85______________                      
 3phv    : PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF                      
         :                                                                                                                          
 4phv(B) : PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF                      
           _____________________________31______39__________________59______________75________85______________                      

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		12.3
Translation
(A) 		-0.2
Closure
(%) 		85.9
Bending Residues
( green ) 		  31 - 34
  39 - 40
  59 - 60
  75 - 76
  85 - 88
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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