Iron-Utilization Periplasmic Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Iron-Utilization Periplasmic Protein
  Conformer 1
(PDB) 		1d9v (A)
  Conformer 2
(PDB) 		1mrp  
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 160 0.92   83 - 87   102 - 225   277 - 307
2 145 0.37   3 - 82   88 - 101   226 - 276

Sequence


           _______________________________________________________________________________81________________100____________________ 
 1d9v(A) : DITVYNGQHKEAATAVAKAFEQETGIKVTLNSGKSEQLAGQLKEEGDKTPADVFYTEQTATFADLSEAGLLAPISEQTIQQTAQKGVPLAPKKDWIALSGRSRVVVYDHTKLSEKDMEKS 
         :                                                                                                                          
 1mrp    : DITVYNGQHKEAATAVAKAFEQETGIKVTLNSGKSEQLAGQLKEEGDKTPADVFYTEQTATFADLSEAGLLAPISEQTIQQTAQKGVPLAPKKDWIALSGRSRVVVYDHTKLSEKDMEKS 
           _______________________________________________________________________________81________________100____________________ 

           _____________________________________________________________________________________________________224________________ 
 1d9v(A) : VLDYATPKWKGKIGYVSTSGAFLEQVVALSKMKGDKVALNWLKGLKENGKLYAKNSVALQAVENGEVPAALINNYYWYNLAKEKGVENLKSRLYFVRHQDPGALVSYSGAAVLKASKNQA 
         :                                                                                                                          
 1mrp    : VLDYATPKWKGKIGYVSTSGAFLEQVVALSKMKGDKVALNWLKGLKENGKLYAKNSVALQAVENGEVPAALINNYYWYNLAKEKGVENLKSRLYFVRHQDPGALVSYSGAAVLKASKNQA 
           _____________________________________________________________________________________________________224________________ 

           ________________________________275__________________________________                                                    
 1d9v(A) : EAQKFVDFLASKKGQEALVAARAEYPLRADVVSPFNLEPYEKLEAPVVSATTAQDKEHAIKLIEEAGLK                                                    
         :                                                                                                                          
 1mrp    : EAQKFVDFLASKKGQEALVAARAEYPLRADVVSPFNLEPYEKLEAPVVSATTAQDKEHAIKLIEEAGLK                                                    
           ________________________________275__________________________________                                                    

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		20.1
Translation
(A) 		0.1
Closure
(%) 		82.2
Bending Residues
( green ) 		  81 - 88
  100 - 103
  224 - 229
  275 - 281
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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