Lipopolysaccharide 1,6-Galactosyltransferase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Lipopolysaccharide 1,6-Galactosyltransferase
  Conformer 1
(PDB) 		6y6g (A)
  Conformer 2
(PDB) 		6y6i (A)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 215 0.24   97 - 98   115 - 131   138 - 159   162 - 271   273 - 274   278 - 338   353 - 353
2 136 0.37   4 - 96   99 - 114   132 - 137   160 - 161   272 - 272   275 - 277   339 - 352   354 - 354

Sequence


           _______________________________________________________________________________________________96_______________114_____ 
 6y6g(A) : *MKIAFIGEAVSGFGGMETVISNVIHTFENSSPKINCEMFFFCRNDKMDKAWLKEIKYAQSFSNIKLSFLRRAKHVYNFSQWLKETSPDIVICIDVISCLYANKARKKSGKHFTIFSWPH 
         :                                                                                                                          
 6y6i(A) : AMKIAFIGEAVSGFGGMETVISNVIHTFENSSPKINCEMFFFCRNDKMDKAWLKEIKYAQSFSNIKLSFLRRAKHVYNFSQWLKETSPDIVICIDVISCLYANKARKKSGKHFTIFSWPH 
           _______________________________________________________________________________________________96_______________114_____ 

           _________131___137___________________159________________________________________________________________________________ 
 6y6g(A) : FSLDHKKHAECITYADYHLAISSGIKEQIMARGISAQDISVVYNPVSIKTVIVPPPERDKPAVFLYVGRLKFEGQKRVKDLFDGLARTTGEWQLHIIGDGSDFEKCQAYSRELGIEQRVI 
         :                                                                                                                          
 6y6i(A) : FSLDHKKHAECITYADYHLAISSGIKEQIMARGISAQDISVVYNPVSIKTVIVPPPERDKPAVFLYVGRLKFEGQKRVKDLFDGLARTTGEWQLHIIGDGSDFEKCQAYSRELGIEQRVI 
           _________131___137___________________159________________________________________________________________________________ 

           _____________________________271___277__________________________________________________________338___________352_____   
 6y6g(A) : WYGWQSAPWQVVQQKIKNVTALLLTSAFEGFPMTLLEAMSYGIPCISSDCMSGPRDMIKPGLNGELYTPGAIDDFVGHLNRVISGEVKYQHDIIPGTIERFYDVLYFKNFNNAIFSKL   
         :                                                                                                                          
 6y6i(A) : WYGWQSAPWQVVQQKIKNVTALLLTSAFEGFPMTLLEAMSYGIPCISSDCMSGPRDMIKPGLNGELYTPGAIDDFVGHLNRVISGEVKYQHDIIPGTIERFYDVLYFKNFNNAIFSKL   
           _____________________________271___277__________________________________________________________338___________352_____   

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		2.4
Translation
(A) 		0.0
Closure
(%) 		37.6
Bending Residues
( green ) 		  96 - 99
  114 - 116
  131 - 132
  137 - 138
  159 - 162
  271 - 275
  277 - 278
  338 - 339
  352 - 354
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

Download and extract PyMOL PML script file Download