Multidrug Efflux Pump Subunit Acra

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Multidrug Efflux Pump Subunit Acra
  Conformer 1
(PDB) 		5o66 (G)
  Conformer 2
(PDB) 		5v5s (G)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 248 2.77   40 - 95   176 - 194   200 - 200   204 - 375
2 88 1.7   96 - 175   195 - 199   201 - 203

Sequence


           ________________________________________________________95______________________________________________________________ 
 5o66(G) : PAVGVVTVKTEPLQITTELPGRTSAYRIAEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQQANAAV 
         :                                                                                                                          
 5v5s(G) : PAVGVVTVKTEPLQITTELPGRTSAYRIAEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQQANAAV 
           ________________________________________________________95______________________________________________________________ 

           _______________175________________194_198__203__________________________________________________________________________ 
 5o66(G) : TAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGALVQNGQATALATVQQLDPIYVDVTQSSNDMMRLKQELANGTLKQENGKAKVSLITSDGIKFPQDGTLEFSDVTVDQTTGSITLR 
         :                                                                                                                          
 5v5s(G) : TAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGALVQNGQATALATVQQLDPIYVDVTQSSNDFLRLKQELANGTLKQENGKAKVSLITSDGIKFPQDGTLEFSDVTVDQTTGCITLR 
           _______________175________________194_198__203__________________________________________________________________________ 

           ____________________________________________________________________________________________________                     
 5o66(G) : AIFPNPDHTMMPGMFVRARLEEGLNPNAILVPQQGVTRTPRGDATVLVVGADDKVETRPIVASQAIGDKWLVTEGLKAGDRVVISGLQKVRPGVQVKAQE                     
         :                                                                                                                          
 5v5s(G) : AIFPNPDHTLLPGMFVRARLEEGLNPNAILVPQQGVTRTPRGDATVLVVGADDKVETRPIVASQAIGDKWLVTEGLKAGDRVVISGLQKVRPGVQVKAQE                     
           ____________________________________________________________________________________________________                     

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		30.8
Translation
(A) 		-4.1
Closure
(%) 		15.7
Bending Residues
( green ) 		  95 - 98
  175 - 176
  194 - 195
  198 - 201
  203 - 204
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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