Nad_binding_2 Domain-Containing Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Nad_binding_2 Domain-Containing Protein
  Conformer 1
(PDB) 		8a5z (B)
  Conformer 2
(PDB) 		8a3x (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 167 0.4   5 - 171
2 120 0.35   172 - 291

Sequence


           ________________________________________________________________________________________________________________________ 
 8a5z(B) : MKPSISVLGTGRMGSALARALLQAGYRTVVWNRTSEKAEPLAALGATVAPTVRQAIDASGIVIVNVSDYAATSTLLRASDVTPGLRGKLIVELTSGTPEGARETSQWTAAHGARYLDGAI 
         :                                                                                                                          
 8a3x(B) : **PSISVLGTGRMGSALARALLQAGYRTVVWNRTSEKAEPLAALGATVAPTVRQAIDASGIVIVNVSDYAATSTLLRASDVTPGLRGKLIVELTSGTPEGARETSQWTAAHGARYLDGAI 
           ________________________________________________________________________________________________________________________ 

           ______________________________________________169_______________________________________________________________________ 
 8a5z(B) : LATPDFIGTDAGTILLSGALEPFAANEDVFRALGGNVQHIGTEPGLANALDSAVLALMWGALFGGLHAIAVCRAEEIDLGELGRQWANTAPVVEGLVADLIKRTSAGRFVSDAETLSSIS 
         :                                                                                                                          
 8a3x(B) : LATPDFIGTDAGTILLSGALEPFAANEDVFRALGGNVQHIGTEPGLANALDSAVLALMWGALFGGLHAIAVCRAEEIDLGELGRQWAATAPVVEGLVADLIKRTSAGRFVSDAETLSSIS 
           ______________________________________________169_______________________________________________________________________ 

           _______________________________________________________                                                                  
 8a5z(B) : PHYGAFQHLKELMEARRIDRTVVDGYDAIFRRAIASGHLHDDFAALSQFMGKAEQ                                                                  
         :                                                                                                                          
 8a3x(B) : PHYGAFQHLKELMEARRIDRTVVDGYDAIFRRAIASGHLHDDFAALSQFMGKA**                                                                  
           _______________________________________________________                                                                  

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		18.7
Translation
(A) 		0.3
Closure
(%) 		99.3
Bending Residues
( green ) 		  169 - 173
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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