Phenylacetate-Coenzyme A Ligase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Phenylacetate-Coenzyme A Ligase
  Conformer 1
(PDB) 		3qov (A)
  Conformer 2
(PDB) 		3qov (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 311 0.49   5 - 330
2 86 0.46   331 - 430

Sequence


           ________________________________________________________________________________________________________________________ 
 3qov(A) : GsTQYWEEEIEIsREKLQELQLQRLKKTINIAANSPYYKEVFSKNGITGDSIQSLDDIRKIPFTTKSDrANYPFGLVAGDkRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYv 
         :                                                                                                                          
 3qov(B) : **TQYWEEEIEIsREKLQELQLQRLKKTINIAANSPYYKEVFSKNGITGDSIQSLDDIRKIPFTTKSDrANYPFGLVAGDkRDGVRIHSS----gNPTVIVHSQHDLDSWANLVARCLYv 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 3qov(A) : GIRKTDVFQNSSGYGfTGGLGFQYGAERLGCLTVPAAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPHTDEQRRKIERlNVKAYNSFGtEnGPGVA 
         :                                                                                                                          
 3qov(B) : GIRKTDVFQNSSGYGfTGGLGFQYGAERLGCLTVPAAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPHTDEQRRKIERlNVKAYNSFGtEnGPGVA 
           ________________________________________________________________________________________________________________________ 

           _______________________________________________________________________325______________________________________________ 
 3qov(A) : FECQEQNGhFWEDCYLVEIIDPETGEPVPEGEIGELVLTTLDREpLIRYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDfIIKGVNIFPqVEKILVQFPELGSNYLITLETVNNQDEiV 
         :                                                                                                                          
 3qov(B) : FECQEQNGhFWEDCYLVEIIDPETGEPVPEGEIGELVLTTLDREpLIRYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDfIIKGVNIFPqVEKILVQFPELGSNYLITLET----dEiV 
           _______________________________________________________________________325______________________________________________ 

           ____________________________________________________________                                                             
 3qov(A) : EVELSDLSTDNYIELEKIRRDIIRQLKDEILVTPKVKLVKKGSLP-------rVKDLRDN                                                             
         :                                                                                                                          
 3qov(B) : EVELSDLSTDNYIELEKIRRDIIRQLKDEILVTPKVKLVKKGSLPQSEGKAVRVKDLR**                                                             
           ____________________________________________________________                                                             

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		158.5
Translation
(A) 		1.2
Closure
(%) 		43.5
Bending Residues
( green ) 		  325 - 333
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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