Phosphoglycerate Kinase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Phosphoglycerate Kinase
  Conformer 1
(PDB) 		3pgk (A)
  Conformer 2
(PDB) 		13pk (A)
  Window Length 9
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 205 3.59   195 - 401
2 183 4.34   8 - 194   402 - 410

Sequence


           ________________________________________________________________________________________________________________________ 
 3pgk(A) : SLSSKLSVQDLDLKDKRVFIRVDFNVPLDGKKITSNQRIVAALPTIKYVLEHHPRYVVLASHLGRPNGE--------RN--------EKYSLAPVAKELQSLLGKDVTFLNDCVGPEVEA 
         :                                                                                                                          
 13pk(A) : ***EKKSINECDLKGKKVLIRVDFNVPVKNGKITNDYRIRSALPTLKKVLTEGGS-CVLMSHLGRPKGIPMAQAGKIRSTGGVPGFQQKATLKPVAKRLSELLLRPVTFAPDCLN--AAD 
           ________________________________________________________________________________________________________________________ 

           _________________________________________________________________________________________194____________________________ 
 3pgk(A) : AVKASAPGSVILLENLRYHIEEEGSRKVDGQKVKASKEDVQKFRHELSSLADVYINDAFGTAHRAHSSMVGFD--LPQRAAGFLLEKELKYFGKALENPTRPFLAILGGAKVADKIQLID 
         :                                                                                                                          
 13pk(A) : VVSKMSPGDVVLLENVRFY-KEEGSKKAK------DREAMAKI---LASYGDVYISDAFGTAHRDSATMTGIPKILGNGAAGYLMEKEISYFAKVLGNPPRPLVAIVGGAKVSDKIQLLD 
           _________________________________________________________________________________________200____________________________ 

           ________________________________________________________________________________________________________________________ 
 3pgk(A) : NLLDKVDSIIIGGGMAFTFKKVLENTEIGDSIFDKAVGPEIAKLMEKAKAKGVEVVLPVDFIIADAFSASANTKTVTDKEGIPAGWQGLDNGPESRKLFAATVAKATVILWNGPPGVFEF 
         :                                                                                                                          
 13pk(A) : NMLQRIDYLLIGGAMAYTFLKA-QGYSIGKSKCEESKLEFARSLLKKAEDRKVQVILPIDHVCHTEFKA-VDSPLITEDQNIPEGHMALDIGPKTIEKYVQTIGKCKSAIWNGPMGVFEM 
           ________________________________________________________________________________________________________________________ 

           _________________________________________________________401______________                                               
 3pgk(A) : EKFAAGTKALLDEVVKSSAA-GNTVIIGGGDTATVAKKYGVTDKISHVSTGGGASLELLEGKELPGVAFLSEKK                                               
         :                                                                                                                          
 13pk(A) : VPYSKGTFAIAKAMGRGTHEHGLMSIIGGGDSASAAELSGEAKRMSHVSTGGGASLELLEGKTLPGVTVLDDK*                                               
           _________________________________________________________406______________                                               

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		37.1
Translation
(A) 		-1.7
Closure
(%) 		92.9
Bending Residues
( green ) 		  194 - 195
  401 - 402
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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