Protein (Surface Antigen Psaa)

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Protein (Surface Antigen Psaa)
  Conformer 1
(PDB) 		1psz (A)
  Conformer 2
(PDB) 		3zk8 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 189 1.12   34 - 186   208 - 210   214 - 218   223 - 229   232 - 232   278 - 297
2 85 0.61   187 - 207   211 - 213   219 - 222   230 - 231   233 - 277   298 - 307

Sequence


           ________________________________________________________________________________________________________________________ 
 1psz(A) : KKDTTSGQKLKVVATNSIIADITKNIAGDKIDLHSIVPIGQDPHEYEPLPEDVKKTSEADLIFYNGINLETGGNAWFTKLVENAKKTENKDYFAVSDGVDVIYLEGQNEKGKEDPHAWLN 
         :                                                                                                                          
 3zk8(A) : ********KLKVVATNSIIADITKNIAGDKIDLHSIVPIGQDPHEYEPLPEDVKKTSEADLIFYNGINLETGGNAWFTKLVENAKKTENKDYFAVSDGVDVIYLEGQNEKGKEDPHAWLN 
           ________________________________________________________________________________________________________________________ 

           ________________________________________186__________________207________218_222_________________________________________ 
 1psz(A) : LENGIIFAKNIAKQLSAKDPNNKEFYEKNLKEYTDKLDKLDKESKDKFNKIPAEKKLIVTSEGAFKYFSKAYGVPSAYIWEINTEEEGTPEQIKTLVEKLRQTKVPSLFVESSVDDRPMK 
         :                                                                                                                          
 3zk8(A) : LENGIIFAKNIAKQLSAKDPNNKEFYEKNLKEYTDKLDKLDKESKDKFNKIPAEKKLIVTSQGAFKYFSKAYGVPSAYIWEINTEEEGTPEQIKTLVEKLRQTKVPSLFVESSVDDRPMK 
           ________________________________________186__________________207________218_222_________________________________________ 

           ___________277_________________297____________                                                                           
 1psz(A) : TVSQDTNIPIYAQIFTDSIAEQGKEGDSYYSMMKYNLDKIAEGLAK                                                                           
         :                                                                                                                          
 3zk8(A) : TVSQDTNIPIYAQIFTDSIAEQGKEGDSYYSMMKYNLDKIAEGLAK                                                                           
           ___________277_________________297____________                                                                           

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		9.6
Translation
(A) 		-0.2
Closure
(%) 		100.0
Bending Residues
( green ) 		  186 - 187
  207 - 208
  210 - 214
  218 - 219
  222 - 233
  277 - 278
  297 - 298
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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