Succinyl-Coa:3-Ketoacid-Coenzyme A Transferase 1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Succinyl-Coa:3-Ketoacid-Coenzyme A Transferase 1
  Conformer 1
(PDB) 		3dlx (C)
  Conformer 2
(PDB) 		3dlx (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 293 0.5   42 - 160   163 - 164   189 - 299   318 - 318   327 - 331   333 - 334   341 - 396   423 - 432
2 127 0.35   161 - 162   300 - 317   319 - 320   332 - 332   339 - 340   397 - 414   433 - 516

Sequence


           ______________________________________________________________________________________________________________________16 
 3dlx(C) : TKFYTDPVEAVKDIPDGATVLVGGFGLCGIPENLIDALLKTGVKGLTAVSNNAGVDNFGLGLLLRSKQIKRMVSSYVGENAEFERQYLSGELEVELTPQGTLAERIRAGGAGVPAFYTPT 
         :                                                                                                                          
 3dlx(B) : TKFYTDPVEAVKDIPDGATVLVGGFGLCGIPENLIDALLKTGVKGLTAVSNNAGVDNFGLGLLLRSKQIKRMVSSYVGENAEFERQYLSGELEVELTPQGTLAERIRAGGAGVPAFYTPT 
           ______________________________________________________________________________________________________________________16 

           0_______________________________________________________________________________________________________________________ 
 3dlx(C) : GYGTLVQEGGSPIKYNKDGSVAIASKPREVREFNGQHFILEEAITGDFALVKAWKADRAGNVIFRKSARNFNLPMCKAAETTVVEVEEIVDIGAFAPEDIHIPQIYVHRLIKGEKYEKRI 
         :                                                                                                                          
 3dlx(B) : GYGTLVQEGGSPIKYNKDGSVAIASKPREVREFNGQHFILEEAITGDFALVKAWKADRAGNVIFRKSARNFNLPMCKAAETTVVEVEEIVDIGAFAPEDIHIPQIYVHRLIKGEKYEKRI 
           0_______________________________________________________________________________________________________________________ 

           ____299_______________317____________________________________________________________________________396_______________4 
 3dlx(C) : ERLSIRdDVRERIIKRAALEFEDGMYANLGIGIPLLASNFISPNITVHLQSENGVLGLGPYPRQHEADADLINAGKETVTILPGASFFSSDESFAMIRGGHVDLTMLGAMQVSKYGDLAN 
         :                                                                                                                          
 3dlx(B) : ERLSIRdDVRERIIKRAALEFEDGMYANLGIGIPLLASNFISPNITVHLQSENGVLGLGPYPRQHEADADLINAGKETVTILPGASFFSSDESFAMIRGGHVDLTMLGAMQVSKYGDLAN 
           ____299_______________317____________________________________________________________________________396_______________4 

           14______________431________________________________________________________________________________________              
 3dlx(C) : WMIPGKMVKGMGGAMDLVSSAKTKVVVTMEHSAKGNAHKIMEKCTLPLTGKQCVNRIITEKAVFDVDKKKGLTLIELWEGLTVDDVQKSTGCDFAVSPKLMPMQQIA              
         :                                                                                                                          
 3dlx(B) : WMIPGK-vKGMGGAMDLVSSAKTKVVVTMEHSAKGNAHKIMEKCTLPLTGKQCVNRIITEKAVFDVDKKKGLTLIELWEGLTVDDVQKSTGCDFAVSPKLMPMQQI*              
           14______________431________________________________________________________________________________________              

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		4.4
Translation
(A) 		0.2
Closure
(%) 		100.0
Bending Residues
( green ) 		  160 - 163
  299 - 303
  317 - 341
  396 - 397
  414 - 423
  431 - 433
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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