DynDom - Protein Domain Motions

Sucrose Isomerase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

Property	Value
Name	Sucrose Isomerase
Conformer 1 (PDB)	4h2c (A)
Conformer 2 (PDB)	4gi6 (A)
Window Length	5
Minimum ratio	1.0
Minimum domain size	20

Domains

Domain	Size	Backbone RMSD (A)	Residues
1	350	0.56	5 - 54 74 - 74 77 - 97 195 - 196 254 - 254 277 - 314 319 - 555
2	201	0.5	55 - 73 75 - 76 98 - 194 197 - 253 255 - 276 315 - 318

Sequence

`___________________________________________________54_________________73______________________97________________________` `4h2c(A) : *GAPWWKSAVFYQVYPRSFKDTNGDGIGDFKGLTEKLDYLKGLGIDAIWINPHYASPNTDNGYDISDYREVMKEYGTMEDFDRLMAELKKRGMRLMVDVVINHSSDQHEWFKSSRASKDN` `:` `4gi6(A) : PGAPWWKSAVFYQVYPRSFKDTNGDGIGDFKGLTEKLDYLKGLGIDAIWINPHYASPNTDNGYDISDYREVMKEYGTMEDFDRLMAELKKRGMRLMVDVVINHSSDQHEWFKSSRASKDN` `___________________________________________________54_________________73______________________97________________________` `______________________________________________________________________194_______________________________________________` `4h2c(A) : PYRDYYFWRDGKDGHEPNNYPSFFGGSAWEKDPVTGQYYLHYFGRQQPDLNWDTPKLREELYAMLRFWLDKGVSGMRFDTVATYSKTPGFPDLTPEQMKNFAEAYTQGPNLHRYLQEMHE` `:` `4gi6(A) : PYRDYYFWRDGKDGHEPNNYPSFFGGSAWEKDPVTGQYYLHYLGRQQPDLNWDTPKLREELYAMLRFWLDKGVSGMRFDTVATYSKTPGFPDLTPEQMKNFAEAYTQGPNLHRYLQEMHE` `______________________________________________________________________194_______________________________________________` `_________253____________________276______________________________309____________________________________________________` `4h2c(A) : KVFDHYDAVTAGEIFGAPLNQVPLFIDSRRKELDMAFTFDLICYDRALDRWHTIPRTLADFRQTIDKVDAIAGEYGWNTFFLGNHDNPRAVSHFGDDRPQWREASAKALATVTLTQRGTP` `:` `4gi6(A) : KVFDHYDAVTAGEIFGAPLNQVPLFIDSRRKELDMAFTFDLIRYDRALDRWHTIPRTLADFRQTIDKVDAIAGEYGWNTFFLGNHDNPRAVSHFGDDRPQWREASAKALATVTLTQRGTP` `_________253____________________276______________________________309____________________________________________________` `________________________________________________________________________________________________________________________` `4h2c(A) : FIFQGDELGMTNYPFKTLQDFDDIEVKGFFQDYVETGKATAEELLTNVALTSRDNARTPFQWDDSANAGFTTGKPWLKVNPNYTEINAAREIGDPKSVYSFYRNLISIRHETPALSTGSY` `:` `4gi6(A) : FIFQGDELGMTNYPFKTLQDFDDIEVKGFFQDYVETGKATAEELLTNVALTSRDNARTPFQWDDSANAGFTTGKPWLKVNPNYTEINAAREIGDPKSVYSFYRNLISIRHETPALSTGSY` `________________________________________________________________________________________________________________________` `____________________________________________________________________________` `4h2c(A) : RDIDPSNADVYAYTRSQDGETYLVVVNFKAEPRSFTLPDGMHIAETLIESSSPAAPAAGAASLELQPWQSGIYKVK` `:` `4gi6(A) : RDIDPSNADVYAYTRSQDGETYLVVVNFKAEPRSFTLPDGMHIAETLIESSSPAAPAAGAASLELQPWQSGIYKVK` `____________________________________________________________________________`

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property	Value
Fixed Domain ( blue )	1
Moving Domain ( red )	2
Rotation Angle (deg)	11.4
Translation (A)	0.7
Closure (%)	95.4
Bending Residues ( green )	54 - 55 73 - 77 97 - 99 194 - 197 253 - 255 276 - 277 309 - 319
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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