T4 Lysozyme

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name T4 Lysozyme
  Conformer 1
(PDB) 		209l  
  Conformer 2
(PDB) 		218l  
  Window Length 9
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 122 2.39   5 - 103   136 - 158
2 32 3.38   104 - 135

Sequence


           _______________________________________________________________________________________________________103______________ 
 209l    : MNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAAAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNS 
         :                                                                                                                          
 218l    : MNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDA---AVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNS 
           _______________________________________________________________________________________________________103______________ 

           ________________135___________________________                                                                           
 209l    : LRMLQQKRWDEAAV-NLAKSRWYNQTPNRAKRVITTFRTGTWDAYK                                                                           
         :                                                                                                                          
 218l    : LRMLQQKRWDEAAVANLAKSRWYNQTPNRAKRVITTFRTGTWDAYK                                                                           
           ________________135___________________________                                                                           

Morph
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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		34.6
Translation
(A) 		-7.6
Closure
(%) 		72.4
Bending Residues
( green ) 		  103 - 104
  135 - 140
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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