Transcriptional Activator Plcr Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Transcriptional Activator Plcr Protein
  Conformer 1
(PDB) 		3u3w (A)
  Conformer 2
(PDB) 		4fsc (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 208 2.06   69 - 280
2 50 1.51   5 - 68

Sequence


           ______________________________________________________________66________________________________________________________ 
 3u3w(A) : AEKLGSEIKKIRVLRGLTQKQLSENICHQSEVSRIESGAVYPSMDILQGIAAKLQIPIIHFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVA 
         :                                                                                                                          
 4fsc(A) : AEKLGSEIKKIRV----tQKQLS------sEVSRIESGAVYPSMDILQGIAA----pIIHFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVA 
           ______________________________________________________________66________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 3u3w(A) : AYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQR 
         :                                                                                                                          
 4fsc(A) : AYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQR 
           ________________________________________________________________________________________________________________________ 

           __________________________________________                                                                               
 3u3w(A) : GECLRKLEYEEAEIEDAYKKASFFFDILEMHAYKEALVNK**                                                                               
         :                                                                                                                          
 4fsc(A) : GECLRKL----aEIEDAYKKASFFFDILEMHAYKEALVNKIS                                                                               
           __________________________________________                                                                               

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		78.4
Translation
(A) 		5.4
Closure
(%) 		61.3
Bending Residues
( green ) 		  66 - 72
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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