Trna Nucleotidyl Transferase-Related Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Trna Nucleotidyl Transferase-Related Protein
  Conformer 1
(PDB) 		3h38 (A)
  Conformer 2
(PDB) 		3h37 (A)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 347 1.66   5 - 372   402 - 402
2 47 1.47   373 - 401   404 - 421

Sequence


           ________________________________________________________________________________________________________________________ 
 3h38(A) : MQIFRDVSKLLVERVDPKILNLFRLLGKFGDEVNMPVYVVGGFVRDLLLGIKNLDIDIVVEGNALEFAEYAKRFLPGKLVKHDKFMTASLFLKGGLRIDIATARLEYYESPAKLPDVEMS 
         :                                                                                                                          
 3h37(A) : *QIFRDVSKLLVERVDPKILNLFRLLGKFGDEVN-pVYVVGGFVRDLLLGIKNLDIDIVVEGNALEFAEYAKRFLPGKLVKHDKF-tASLFLKGGLRIDIATAe---------------s 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 3h38(A) : TIKKDLYRRDFTINAMAIKLNPKDFGLLIDFFGGYRDLKEGVIRVLHTLSFVDDPTRILRAIRFEQRFDFRIEETTERLLKQAVEEGYLERTTGPRLRQELEKILEEKNPLKSIRRMAQF 
         :                                                                                                                          
 3h37(A) : TIKKDLYRRDFTINA-aIKLNPKDFGLLIDFFGGYRDLKEGVIRVLHTLSFVDDPTRILRAIRFEQRFDFRIEETTERLLKQAVEEGYLERTTGPRLRQELEKILEEKNPLKSIRR-aQF 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 3h38(A) : DVIKHLFPKTYYTPSMDEKMENLFRNIPWVEENFGEVDRFYAVLHVFLEFYDDESWKEVRDRYSLRRNLINEIRHVEKSAPALLEMLSERVPASFVYPLVKGVSNETICHFLAYLSGEKE 
         :                                                                                                                          
 3h37(A) : DVIKHLFPKTYYTPS-dEK-eNLFRNIPWVEENFGEVDRFYAVLHVFLEFYDDESWKEVRDRYSLRRNLINEIRHVEKSAPALLE-lSERVPASFVYPLVKGVSNETICHFLAYLSGEKE 
           ________________________________________________________________________________________________________________________ 

           _________372__________________________401____________________________                                                    
 3h38(A) : GLFKSYLLKIKNTKLEKINGEYLIRKGITSGKIIGEVLEKILMKKLDGDTRDEEEILEEVLASL*****                                                    
         :                                                                                                                          
 3h37(A) : GLFKSYLLKIKNTKLEKINGEYLIRKGITSGKIIGEVLEKIL-kKLDGDTRDEEEILEEVLASLETEGK                                                    
           _________372__________________________401____________________________                                                    

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		16.3
Translation
(A) 		0.2
Closure
(%) 		63.2
Bending Residues
( green ) 		  372 - 373
  401 - 404
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

Download and extract PyMOL PML script file Download