Tryptophan Synthase Beta Chain 1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Tryptophan Synthase Beta Chain 1
  Conformer 1
(PDB) 		1wdw (B)
  Conformer 2
(PDB) 		6amc (C)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 261 0.59   3 - 17   22 - 31   49 - 84   92 - 94   182 - 191   196 - 383
2 119 0.42   18 - 21   32 - 48   85 - 91   95 - 181   192 - 195

Sequence


           _______________17____________31_______________48__________________________________84_____91_94__________________________ 
 1wdw(B) : MWFGEFGGQYVPETLIEPLKELEKAYKRFKDDEEFNRQLNYYLKTWAGRPTPLYYAKRLTEKIGGAKIYLKREDLVHGGAHKTNNAIGQALLAKFMGKTRLIAETGAGQHGVATAMAGAL 
         :                                                                                                                          
 6amc(C) : MWFGEFGGQYVPETLIGPLKELEKAYKRFKDDEEFNRQLNYYLKTWAGRPTPLYYAKRLTEKIGGAKVYLKREDLVHGGAH-tNNAIGQALLAKFMGKTRLIAETGAGQHGVATAMAGAL 
           _______________17____________31_______________48__________________________________84_____91_94__________________________ 

           __________________________________________________________181_______191_195_____________________________________________ 
 1wdw(B) : LGMKVDIYMGAEDVERQKMNVFRMKLLGANVIPVNSGSRTLKDAINEALRDWVATFEYTHYLIGSVVGPHPYPTIVRDFQSVIGREAKAQILEAEGQLPDVIVACVGGGSNAMGIFYPFV 
         :                                                                                                                          
 6amc(C) : LGMKVDIYMGAEDVERQKMNVFRMKLLGANVIPVNSGSRTLKDAINEALRDWVATFEYTHYLIGSVVGPHPYPTIVRDFQSVIGREAKAQILEAEGQLPDVIVACVGGGSNAMGIFYPFV 
           __________________________________________________________181_______191_195_____________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1wdw(B) : NDKKVKLVGVEAGGKGLESGKHSASLNAGQVGVFHGMLSYFLQDEEGQIKPTHSIAPGLDYPGVGPEHAYLKKIQRAEYVTVTDEEALKAFHELSRTEGIIPALESAHAVAYAMKLAKEM 
         :                                                                                                                          
 6amc(C) : NDKKVKLVGVEAGGKGLESGKHSASLNAGQVGVSHGMLSYFLQDEEGQIKPSHSIAPGLDYPGVGPEHAYLKKIQRAEYVAVTDEEALKAFHELSRTEGIIPALESAHAVAYAMKLAKEM 
           ________________________________________________________________________________________________________________________ 

           ___________________________                                                                                              
 1wdw(B) : SRDEIIIVNLSGRGDKDLDIVLKVS**                                                                                              
         :                                                                                                                          
 6amc(C) : SRDEIIIVNLSGRGDKDLDIVLKVSGN                                                                                              
           ___________________________                                                                                              

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		6.7
Translation
(A) 		-0.1
Closure
(%) 		82.7
Bending Residues
( green ) 		  17 - 22
  31 - 33
  48 - 49
  84 - 85
  91 - 92
  94 - 95
  181 - 182
  191 - 192
  195 - 196
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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