Tryptophanyl-Trna Synthetase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Tryptophanyl-Trna Synthetase
  Conformer 1
(PDB) 		1m83 (A)
  Conformer 2
(PDB) 		1maw (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 174 1.79   3 - 3   11 - 14   36 - 53   57 - 61   67 - 174   179 - 182   291 - 324
2 148 1.1   4 - 10   15 - 35   54 - 56   62 - 66   175 - 178   183 - 290

Sequence


           __3_____9________________________35________________53_56___61___66______________________________________________________ 
 1m83(A) : MKTIFSGIQPSGVITIGNYIGALRQFVELQHEYNCYFCIVDQHAITVWQDPHELRQNIRRLAALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIGELERMTQFKEKSAGKEAVSA 
         :                                                                                                                          
 1maw(B) : MKTIFSGIQPSGVITIGNYIGALRQFVELQHEYNCYFCIVDQHAITVWQDPHELRQNIRRLAALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIGELERMTQFKEKSAGKEAVSA 
           __3_____9________________________35________________53_56___61___66______________________________________________________ 

           ___________________________________________________174__________________________________________________________________ 
 1m83(A) : GLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERFNKRYGELFTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIKSAVTDSEGTIRYDKEAKPGISN 
         :                                                                                                                          
 1maw(B) : GLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERFNKRYGELFTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIKSAVTDSEGTIRYDKEAKPGISN 
           ___________________________________________________174__________________________________________________________________ 

           _______________________________________________290______________________________________                                 
 1m83(A) : LLNIYSTLSGQSIEELERQYEGKGYGVFKADLAQVVIETLRPIQERYHHWMESEELDRVLDEGAEKANRVASEMVRKMEQAMGLGRRR                                 
         :                                                                                                                          
 1maw(B) : LLNIYSTLSGQSIEELERQYEGKGYGVFKADLAQVVIETLRPIQERYHHWMESEELDRVLDEGAEKANRVASEMVRKMEQAMGLGR**                                 
           _______________________________________________290______________________________________                                 

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		16.2
Translation
(A) 		0.2
Closure
(%) 		91.2
Bending Residues
( green ) 		  3 - 4
  9 - 15
  35 - 36
  53 - 54
  56 - 57
  61 - 62
  66 - 67
  174 - 183
  290 - 291
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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