Udp-Galactose 4-Epimerase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Udp-Galactose 4-Epimerase
  Conformer 1
(PDB) 		2udp (A)
  Conformer 2
(PDB) 		1ek5 (A)
  Window Length 13
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 260 1.58   8 - 204   235 - 268   304 - 332
2 65 0.9   205 - 234   269 - 303

Sequence


           ________________________________________________________________________________________________________________________ 
 2udp(A) : **MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRS--VLPV----IERLGGKHPTFVEGDIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMR 
         :                                                                                                                          
 1ek5(A) : MAEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMK 
           ________________________________________________________________________________________________________________________ 

           _________________________________________________________________________________________204___________________________2 
 2udp(A) : AANVKNFIFSSSATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRD 
         :                                                                                                                          
 1ek5(A) : AHGVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKTWNAVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTGVRD 
           _________________________________________________________________________________________212___________________________2 

           34_______________________________268________________________________303___________________________________               
 2udp(A) : YIHVMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRREGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHWQSRHPQGYPD               
         :                                                                                                                          
 1ek5(A) : YIHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVVARREGDVAACYANPSLAQEELGWTAALGLDRMCEDLWRWQKQNPSGFGT               
           42_______________________________276________________________________311___________________________________               

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		12.3
Translation
(A) 		-0.3
Closure
(%) 		88.2
Bending Residues
( green ) 		  204 - 206
  234 - 235
  268 - 270
  303 - 304
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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