Udp-N-Acetylglucosamine-N-Acetylmuramyl- (Pentapeptide) Pyrophosphoryl-Undecaprenol N- Acetylglucosamine Transferase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Udp-N-Acetylglucosamine-N-Acetylmuramyl- (Pentapeptide) Pyrophosphoryl-Undecaprenol N- Acetylglucosamine Transferase
  Conformer 1
(PDB) 		1f0k (A)
  Conformer 2
(PDB) 		3s2u (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 169 2.55   161 - 261   265 - 265   267 - 340
2 154 2.34   9 - 160   262 - 264   266 - 266   341 - 352

Sequence


           ________________________________________________________________________________________________________________________ 
 1f0k(A) : KRLMVMAGGTGGHVFPGLAVAHHLMAQGWQVRWLGTADRMEADLVPKHGIEIDFIRISGLRGKGIKALIAAPLRIFNAWRQARAIMKAYKPDVVLGMGGYVSGPGGLAAWSLGIPVVLHE 
         :                                                                                                                          
 3s2u(A) : GNVLIMAGGTGGHVFPALACAREFQARGYAVHWLGTPRGIENDLVPKAGLPLH--------------LIQaPLELLKSLFQALRVIRQLRPVCVLGLGGYVTGPGGLAARLNGVPLVIHE 
           ________________________________________________________________________________________________________________________ 

           _______________________________160______________________________________________________________________________________ 
 1f0k(A) : QNGIAGLTNKWLAKIATKVMQAFPGAFPNAEVVGNPVRTDVLALPLPQQRLAGREGPVRVLVVGGSQGARILNQTMPQVAAKLGDSV--TIWHQSGKGSQQSVEQAYAEAGQPQHKVTEF 
         :                                                                                                                          
 3s2u(A) : QNAVAGTANRSLAPIARRVCEAFPDTFPArLTTGNPVRGELFLDAHARAPLTGRR--VNLLVLGGSLGAEPLNKLLPEALAQVPLEIRPAIRHQAGRQHAEITAERYRTVAV-EADVAPF 
           _______________________________159______________________________________________________________________________________ 

           ______________261______________________________________________________________________________340_________________      
 1f0k(A) : IDDMAAAYAWADVVVCRSGALTVSEIAAAGLPALFVPFQHKDRQQYWNALPLEKAGAAKIIEQPQLSVDAVANTLAG--WSRETLLTMAERARAASIPDATERVANEVSRVARAL      
         :                                                                                                                          
 3s2u(A) : ISDMAAAYAWADLVICRAGALTVSELTAAGLPAFLVPdDHQTR----NAEFLVRSGAGRLLPQKSTGAAELAAQLSEVLMHPETLRSMADQARSLAKPEATRTVVDACLEVA***      
           ______________259______________________________________________________________________________341_________________      

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		24.0
Translation
(A) 		-0.1
Closure
(%) 		74.3
Bending Residues
( green ) 		  160 - 161
  261 - 262
  264 - 267
  340 - 341
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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