Virb11 Homolog

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Virb11 Homolog
  Conformer 1
(PDB) 		1nlz (C)
  Conformer 2
(PDB) 		1opx (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 189 0.6   134 - 326
2 79 0.56   30 - 133

Sequence


           ________________________________________________________________________________________________________________________ 
 1nlz(C) : **********************LRHATEELFGDFLKeNITEICYNGNKVVWVLKNNGEWQPFDVRDRKAF-----------------------nPILSSNLANGERVQIVLSPVTVNDET 
         :                                                                                                                          
 1opx(A) : LSAEDKKFLEVERALKEAALNPLRHATEELFGDFLKeNITEICYNGNKVVWVLKNNGEWQPFDVRDRKAFSLSRLhFARCCASFKKKTIDNYENPILSSNLANGERVQIVLSPVTVNDET 
           ________________________________________________________________________________________________________________________ 

           ___133__________________________________________________________________________________________________________________ 
 1nlz(C) : ISISIRIPSKTTYPHSFFEEQGFYNLLDNKEQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIeFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRrPDRIILGEL 
         :                                                                                                                          
 1opx(A) : ISISIRIPSKTTYPHSFFEEQGFYNLLDNKEQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIeFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRrPDRIILGEL 
           ___133__________________________________________________________________________________________________________________ 

           _______________________________________________________________________________                                          
 1nlz(C) : RSSEAYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLANsSSNSAARNIKFESLIEGFKDLIDiVHINHHKQCDEFYIKHR                                          
         :                                                                                                                          
 1opx(A) : RSSEAYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLANsSSNSAARNIKFESLIEGFKDLIDiVHINHHKQCDEFYIK**                                          
           _______________________________________________________________________________                                          

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		7.3
Translation
(A) 		-1.9
Closure
(%) 		66.7
Bending Residues
( green ) 		  133 - 134
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

Download and extract PyMOL PML script file Download