Vincent Moulton's Publications
An up-to-date list of my publications is available in the
UEA Digital Repository, which includes some downloadable versions.
Otherwise please contact
Vincent Moulton if you would like a copy of a
publication.
Papers in Refereed Journals
In press
[248]
Phylogenetic consensus networks: Computing a consensus of 1-nested phylogenetic networks,
K.Huber, V.Moulton, A.Spillner,
Journal of Graph Algorithms and Applications
2024
[247]
Orienting undirected phylogenetic networks,
K.Huber, L.van Iersel, R.Janssen, M.Jones, V.Moulton, Y.Murakami, C.Semple,
Journal of Computer and System Sciences, 2024, 140: 103480.
[246]
The space of equidistant phylogenetic cactuses,
K.Huber, V.Moulton, M.Owen, K.St.John, A.Spillner,
2024, 28, 1-32.
[245]
A distance-based model for convergent evolution,
Journal of Mathematical Biology,
2024, 88, 17.
2023
[244]
Dataset of 143 metagenome-assembled genomes from the
Arctic and Atlantic Oceans, including 21 for eukaryotic organisms,
T.Mock et al., Data in Brief, 2023, 47, 108990.
[243]
Genetic and structural diversity of prokaryotic ice-binding proteins
from the central Arctic Ocean,
J.Winder et al., Genes, 2023, 14, 2, 363.
[242]
Diversities and the generalized circumradius,
D.Bryant, K.Huber, V.Moulton, P.Tupper, Discrete and Computational Geometry,
2023, 70, 4, 1862-1883.
[241]
Planar rooted phylogenetic networks,
V.Moulton, T.Wu,
IEEE/ACM Transactions on Computational Biology and Bioinformatics, 20, 2, 1289-1297.
[240]
Polynomial invariants for cactuses,
L.v.Iersel, Y.Murakami, V.Moulton, Information Processing Letters, 182, 106394.
[239]
Planar median graphs and cubesquare-graphs,
C.Seemann, V.Moulton, P.Stadler, M.Hellmuth, Discrete Applied Mathematics,
2023, 331, 38-58.
[238]
Injective split systems,
M.Hellmuth, K.Huber, V.Moulton, G.Scholz, P.Stadler, Graphs and Combinatorics,
2023, 39 (4): 65
[237]
Encoding and ordering X-cactuses,
A.Francis, K.Huber, V.Moulton, T.Wu,
Advances in Applied Mathematics, 2023, 142, 102414.
2022
[236]
Multiomics in the central Arctic Ocean for benchmarking biodiversity change,
T.Mock et al., PLoS biology, 2022, 20(10), e3001835.
[235]
Forest based networks,
K.Huber, V.Moulton, G.Scholz, 2022, 84, 119.
[234]
An algorithm for reconstructing level-2 phylogenetic networks from trinets,
L.van Iersel, S.Kole, V.Moulton, L.Nipius, 2022,
Information Processing Letters, 178, 106300.
[233]
Posets and spaces of k-noncrossing RNA Structures,
V.Moulton, T.Wu, SIAM Journal on Discrete Mathematics, 2022, 36, 1586-1611
[232]
Metagenome-assembled genomes of phytoplankton microbiomes from Arctic
and Atlantic Oceans,
A.Duncan et al., Microbiome, 2022, 10, 67.
[231]
Degradome assisted plant microRNA
prediction under alternative annotation
criteria,
S.Alzahrani, C.Applegate, D.Swarbreck, T.Dalmay, L.Folkes, V.Moulton,
IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2022,
19, 3374-3383.
[230]
Order distances and split systems,
V.Moulton, A.Spillner, Order, 2022, 39, 291-308.
[229]
The role of zinc in the adaptive evolution of polar phytoplankton,
N.Ye et al., Nature Ecology and Evolution, 2022, 6, 965-978.
[228]
Level-2 networks from shortest and longest distances,
K.Huber, L.van Iersel, R.Janssen, M.Jones. V.Moulton, Y.Murakami,
Discrete Applied Mathematics, 2022, 306, 138-165.
[227]
Overlaid species forests,
K.Huber, V.Moulton, G.Scholz,
Discrete Applied Mathematics, 2022, 309, 110-122.
2021
[226]
Optimal realizations and the block decomposition of
a finite metric space,
K.Huber, V.Moulton, A.Spillner,
Discrete Applied Mathematics, 302, 2021, 103-13.
[225]
The biogeographic differentiation of algal microbiomes in the
surface ocean from pole to pole,
K.Martin et al., Nature Communications, 12(1), 2021, 1-5.
[224]
The rigid hybrid number for two phylogenetic trees
K.Huber, S.Linz, V.Moulton,
Journal of Mathematical Biology, 2021, 82(5), 1-29.
2020
[223]
NATpare: a pipeline for high-throughput prediction and functional
analysis of nat-siRNAs,
J.Thody, L.Folkes, V.Moulton,
Nucleic Acids Research, 2020, 48(12), 6481-6490.
[222]
Convergence of prognostic gene signatures suggests
underlying mechanisms of human prostate cancer progression,
B.Luca, V.Moulton, C.Ellis, S.Connell, D.Brewer, C.Cooper,
Genes, 2020, Genes, 11(7), 802.
[221]
Reconstructibility of unrooted level-k phylogenetic networks from distances,
L.van Iersel, V.Moulton, Y.Murakami,
Advances in Applied Mathematics, 2020, 120, 102075.
[220]
Recognizing and realizing cactus metrics,
M.Hayamizo, K.Huber, V.Moulton, Y.Murakami,
Information Processing Letters, 2020, 157, 105916.
[219]
Evolution through segmental duplications and losses - A Super-Reconciliation
approach,
M.Delabre et al.,
Algorithms for Molecular Biology, 2020, 15, 1-15.
[218]
PAREameters: a tool for computational inference
of plant miRNA-mRNA targeting rules using small RNA and degradome sequencing data,
J.Thody, V.Moulton, I.Mohorianu,
Nucleic Acids Research, 2020, 48(5), 2258-2270.
[217]
A novel stratification framework for predicting outcome in patients with prostate cancer,
B.Luca, V.Moulton, C.Ellis,
D.Edwards, C.Campbell, R.Cooper, J.Clark, D.Brewer, C.Cooper,
British Journal of Cancer,
2020, 122(10), 1467-1476.
[216]
INDISIM-Denitrification, an individual-based model for study the denitrification process,
P.Araujo-Granda, A.Gras, M.Ginovart, V.Moulton,
Journal of Industrial Microbiology and Biotechnology,
2020, 47(1), 1-20.
2019
[215]
Reconciling event-labeled gene trees with MUL-trees
and species networks,
M.Hellmuth, K.Huber, V.Moulton, Journal of Mathematical Biology,
79(5), 2019, 1885-1925.
[214]
Reconstructing tree-child networks from reticulate-edge-deleted
subnetworks,
Y.Murakami, L.van Iersel, R.Janssen, M.Jones, V.Moulton
Bulletin of Mathematical Biology, 81(10), 2019, 3823-3863.
[213]
Exploring and visualising spaces of tree reconciliations,
K.Huber, V.Moulton, M.-F.Sagot, B.Sinaimeri,
Systematic Biology, 2019, 68(4), 607-618.
[212]
OSF-Builder: A new tool for constructing and
representing evolutionary histories involving
introgression,
G.Scholz, A-A. Popescu, M.Taylor, V.Moulton, K.Huber,
Systematic Biology, 68(5), 2019, 717-729.
[211]
Phylogenetic flexibility via Hall-type inequalities and submodularity,
K.Huber, V.Moulton, M.Steel, Journal of Mathematical Biology, 81(2), 2019, 598-617.
[210]
Hierarchies from least stable ancestors in nonbinary phylogenetic networks,
K.Huber, V.Moulton, T.Wu, Journal of Classification, 36(2), 2019, 200-231.
[209]
Three-way symbolic tree-maps and ultrametrics,
K.Huber, V.Moulton, G.Scholz, Journal of Classification, 36(3), 2019, 513-540.
[208]
The complexity of comparing multiply-labelled trees by extending
phylogenetic-tree metrics,
M.Lafond, N.El-Mabrouk, K.Huber, V.Moulton, Theoretical Computer Science,
760, 2019, 15-34.
[207]
On the polytopal structure of the tight-span of a totally
split-decomposable metric,
K.Huber, J.Koolen, V.Moulton, Discrete Mathematics, 342(3), 2019, 868-878
2018
[206]
The UEA sRNA Workbench (Version 4.4): a
comprehensive suite of tools
for the analysis of microRNA and small RNA datasets,
M.Stocks, I.Mohorianu, M.Beckers, C.Paicu, S.Moxon,
J.Thody, T.Dalmay, V.Moulton, Bioinformatics, 2018, 34(19).
[205]
Recovering normal networks from shortest inter-taxa
distance information,
M.Bordewich, K.Huber, V.Moulton, C.Semple,
Journal of Mathematical Biology, 77(3), 2018, 571-594.
[204]
PAREsnip2: A tool for high-throughput
prediction of small RNA targets from degradome sequencing
data using configurable targeting rules,
J.Thody, L.Folkes, Z.Medina-Calzada, P.Xu, T.Dalmay, V.Moulton,
Nucleic Acids Research, 46(17), 2018, 8730-8739.
[203]
Geometric medians in reconciliation spaces,
K.Huber, V.Moulton, M.-F.Sagot, B.Sinaimeri, Information Processing Letters,
136, 2018, 96-101.
[202]
Quarnet inference rules for level-1 networks,
K.Huber, V.Moulton, C.Semple, T.Wu,
Bulletin of Mathematical Biology, 80(8), 2018, 2137-2153
[201]
UPGMA and the normalized equidistant minimum evolution problem,
V.Moulton, A.Spillner, T.Wu, Theoretical Computer Science, 721, 2018, 1-15.
[200]
Leaf-reconstructibility of phylogenetic networks,
L.van Iersel, V.Moulton,
SIAM Journal on Discrete Mathematics, 32(3), 2018, 2047-2066.
[199]
Combinatorial properties of triplet covers for
binary trees,
S.Gruenewald, K.Huber, V.Moulton, M.Steel, Advances
in Applied Mathematics, 99, 2018, 59-82.
[198]
Identifiability of tree-child phylogenetic networks under a
probabilistic recombination-mutation model of evolution,
A.Francis, V.Moulton, Journal of Theoretical Biology,
446, 2018, 160-167.
[197]
Tree-based unrooted phylogenetic networks,
A.Francis, K.Huber, V.Moulton, Bulletin of Mathematical Biology,
80(2), 2018, 404-416.
[196]
Bounds for phylogenetic network space metrics,
A.Francis, K.Huber, V.Moulton, T.Wu, Journal of Mathematical Biology,
76(5), 2018, 1229-1248.
[195]
SPECTRE: a Suite of PhylogEnetiC Tools for Reticulate Evolution,
S.Bastkowski, D.Mapleson, A.Spillner, T.Wu, M.Balvociute, V.Moulton,
Bioinformatics, 1, 2018, 2.
[194]
DESNT: A Poor Prognosis category of human prostate cancer,
B.Luca et al.,
European Urology Focus, 4(6), 2018, 842-850.
2017
[193]
miRCat2: Accurate prediction of plant and animal
microRNAs from next-generation sequencing datasets,
C.Paicu, I.Mohorianu, M.Stocks, P.Xu, A.Coince, M.Billmeier,
T.Dalmay, V.Moulton, S.Moxon, Bioinformatics, 33(16), 2017, 2446-2454.
[192]
Comprehensive processing of high throughput small RNA sequencing
data including quality checking, normalization and
differential expression analysis using the UEA sRNA Workbench,
M.Beckers, I.Mohorianu, M.Stocks, C.Applegate,
T.Dalmay, V.Moulton, RNA, 23(6), 2017, 823-835
[191]
Minimum triplet covers of binary phylogenetic X-trees,
K.Huber, V.Moulton, M.Steel,
Journal of Mathematical Biology, 75(6-7), 2017,1827-1840.
[190]
MicroRNAs associated with caste determination and
differentiation in a primitively eusocial insect,
D.Collins, I.Mohorianu, M.Beckers, V.Moulton,
T.Dalmay, A.Bourke, Scientific Reports, 7, 2017.
[189]
Binets: fundamental building blocks for phylogenetic networks,
L.van Iersel, V.Moulton, E.de Swart, T.Wu,
Bulletin of Mathematical Biology, 79(5), 2017, 1135-1154.
[188]
Evolutionary genomics of a cold-adapted diatom: Fragilariopsis cylindrus,
T.Mock et al., Nature., 541, 2017, 536-540.
[187]
A cubic-time algorithm for computing the
trinet distance between level-1 networks
V.Moulton, J.Oldman, T.Wu,
Information Processing Letters, 123, 2017, 36-41.
[186] Reconstructing phylogenetic level-1 networks from nondense
binet and trinet sets,
K.Huber, L. van Iersel, V.Moulton, C.Scornavacca, T.Wu,
Algorithmica, 77(1), 2017, 173-200.
2016
[185]
Transforming phylogenetic networks: Moving beyond tree space,
K.Huber, V.Moulton, T.Wu,
Journal of Theoretical Biology, 404, 2016, 30-39.
[184]
Characterizing block graphs in terms of their vertex-induced partitions,
A.Dress, K.Huber, J.Koolen, V.Moulton, A.Spillner,
Australasian Journal of Combinatorics, 66(1), 2016.
[183]
Reduction rules for the maximum parsimony distance on phylogenetic trees,
M.Fischer, S.Kelk, V.Moulton, T.Wu,
Theoretical Computer Science, 646, 2016, 1-15.
[182]
Piecing together small networks to reconstruct reticulate evolutionary histories,
J.Oldman, T.Wu, L. van Iersel, V.Moulton,
Molecular Biology and Evolution, 33(8), 2016, 2151-2162.
[181]
Folding and unfolding phylogenetic trees and networks,
K.Huber, V.Moulton, M.Steel, T.Wu,
Journal of Mathematical Biology, 73(6), 2016, 1761-1780.
[180]
Spaces of phylogenetic networks from generalized nearest-neighbor interchange operations,
K.Huber, S.Linz, V.Moulton, T.Wu,
Journal of Mathematical Biology, 72(3), 2016, 699-725.
[179]
The minimum evolution problem is hard: A novel link
between tree inference and graph clustering problems,
S.Bastowski, V.Moulton, A.Spillner, T.Wu,
Bioinformatics, 32, 2016, 518-522.
[178]
INDISIM-Paracoccus, an individual-based and thermodynamic model for a denitrifying bacterium,
P.Granda, A.Gras, M.Ginovart, V.Moulton,
Journal of Theoretical Biology, 403, 2016, 45-58.
2015
[177]
A parsimony-based metric for phylogenetic trees,
V.Moulton, T.Wu, Advances in Applied Mathematics, 66, 2015, 22-45.
[176] Neighborhoods of trees in circular orderings,
S.Bastkowski. V.Moulton, A.Spillner, T.Wu, Bulletin of Mathematical Biology,
77(1), 2015, 46-70.
[175] How much information is needed to infer reticulate evolutionary histories?,
K.Huber, L.van Iersel, V.Moulton, T.Wu, Systematic Biology, 64(1), 2015, 102-111
[174]
Optimal realisations of two-dimensional, totally decomposable metrics,
S.Herrmann, J.Koolen, A.Lesser, V.Moulton, T.Wu,
Discrete Mathematics, 338(8), 2015, 1289-1299.
[173]
There are only finitely many distance-regular graphs of fixed valency greater than two,
S.Bang, A.Dubickas, J.Koolen, V.Moulton,
Advances in Mathematics, 269, 2015, 1-55.
2014
[172] Computing the blocks of a quasi-median graph,
S.Herrmann, V.Moulton, Discrete Applied Mathematics, 179, 2014, 129-138.
[171]
Metatranscriptomes from diverse microbial communities: assessment
of data reduction techniques for rigorous annotation,
A.Toseland, S.Moxon, T.Mock, V.Moulton, BMC Genomics, 2014, 15:901.
[170]
Global discovery and characterization of small noncoding RNAs in marine microalgae,
T.Mock, S.Lopez-Gomollon, M.Beckers, T.Rathjen, S.Moxon, F.Maumus, I.Mohorianu,
V.Moulton, T.Dalmay,
BMC Genomics, 2014, 15:697.
[169]
Representing partitions on trees,
K.Huber, V.Moulton, C.Semple, T.Wu,
SIAM Journal on Discrete Mathematics, 28(3), 2014, 1152-1172.
[168]
Trinets encode tree-child and level-2 phylogenetic networks,
L.van Iersel, V.Moulton,
Journal of Mathematical Biology, 68(7), 2014, 1707-1729.
[167]
Fishing for minimum evolution trees with neighbor-nets,
S.Bastkowski, V.Moulton, A.Spillner,
Information Processing Letters, 114(1-2), 2014, 13-18.
[166]
FlatNJ: A novel network-based approach to visualize evolutionary and biogeographical relationships,
M.Balvovciute, A.Spillner, V.Moulton,
Systematic Biology, 63(3), 2014, 383-396.
[165]
Prioritizing populations for conservation using indices of genetic isolation,
L.Volkmann, M.Logan, I.Martyn, V.Moulton, A.Spillner, A.Mooers,
PLOS One, 9(2), 2014, e88945.
2013
[164]
The impact of temperature on marine phytoplankton resource allocation and metabolism,
A.Toseland, S.J.Daines, J.R.Clark, A.Kirkham, J.Strauss,
C.Uhlig, T.M.Lenton, K.Valentin, G.A.Pearson, V.Moulton, T.Mock,
Nature Climate Change, 3, 2013, 979-984.
[163]
Searching for realizations of finite metric spaces in tight spans,
S.Herrmann, V.Moulton, A.Spillner,
Discrete Optimisation, 10(4), 2013, 310-319.
[162]
CoLIde: A bioinformatics tool for CO-expression-based small RNA Loci Identification
using high-throughput sequencing data,
I.Mohorianu, M.Stocks, J.Wood, T.Dalmay, V.Moulton,
RNA Biology, 10(7), 2013, 1221-30.
[161]
Obtaining splits from cut sets of tight spans,
A.Dress, V.Moulton, A.Spillner, T.Wu,
Discrete Applied Mathematics, 161 (10-11), 2013, 1409-1420.
[160]
Modelling the effect of copper availability on bacterial denitrification,
H.Woolfenden, A.Gates, C.Bocking, M.Blyth, D.Richardson, V.Moulton,
MicrobiologyOpen, 2(5), 2013, 756-765.
[159]
SuperQ: Computing supernetworks from quartets,
S.Gruenewald, A.Spillner, S.Bastkowski, A.Bogershausen, V.Moulton,
IEEE/ACM Transactions on Computational Biology and Bioinformatics,
10(1), 2013, 151-160.
[158]
Encoding and constructing 1-nested phylogenetic networks with trinets,
K.Huber, V.Moulton,
Algorithmica, 2013, 66(3), 2013, 714-738.
[157]
Orthology relations, symbolic ultrametrics, and cographs,
M.Hellmuth, M.Hernandez-Rosales, K.Huber, V.Moulton, P.Stadler, N.Wieseke,
Journal of Mathematical Biology,
66(1-2), 2013, 399-420.
[156]
MirPlex: A tool for identifying miRNAs in
high-throughput sRNA datasets without a genome,
D.Mapleson, S.Moxon, T.Dalmay, V.Moulton,
Journal of Experimental Zoology: Part B, 320(1), 2013, 47-56.
[155]
Novel distances for Dollo data,
M.Woodhams, D.Steane, R.Jones, D.Nicolle, V.Moulton. B.Holland,
Systematic Biology, 62(1), 2013, 62-77.
[154]
Generating functions for multi-labeled trees,
E.Czabarka, P.L.Erdos V.Johnson, V.Moulton,
Discrete Applied Mathematics, 161(1-2), 2013, 107-117.
2012
[153]
The 'Butterfly effect' in Cayley graphs
with applications to genomics,
V.Moulton, M.Steel,
Journal of Mathematical Biology, 65(6-7), 2012, 1267-1284.
[152]
Computational modelling of the regulatory network organising the
wound response in Arabidopsis thaliana,
J.Kim, A.Camargo, A.Devoto, V.Moulton, J.Turner,
Artificial Life, 18(4), 2012, 445-60.
[151]
Diverse correlation patterns between microRNAs and their targets during tomato fruit development
indicates different modes of microRNA actions,
S.Lopez-Gomollon, I.Mohorianu, G.Szittya, V.Moulton, T.Dalmay,
Planta, 236(6), 2012, 1875-87.
[150]
The UEA sRNA Workbench: A suite of tools for
analysing and visualising next generation sequencing
microRNA and small RNA datasets,
M.Stocks, S.Moxon, D.Mapleson, H.Woolfenden, I.Mohorianu,
L.Folkes, F.Schwach, T.Dalmay, V.Moulton,
Bioinformatics, 28(15), 2012, 2059-61.
[149]
PAREsnip: a tool for rapid genome-wide discovery of small RNA/target interactions evidenced through
degradome sequencing,
L.Folkes, S.Moxon, H.Woolfenden, M.Stocks, G.Szittya, T.Dalmay, V.Moulton,
Nucleic Acids Research, 2012, 40(13):e103.
[148]
The size of 3-compatible, weakly compatible split systems,
S.Gruenewald, J.Koolen, V.Moulton, T.Wu,
Journal of Applied Mathematics and Computing,
40 (1-2), 2012, 249-259.
[147]
The split decomposition of a k-dissimilarity map,
S.Herrmann, V.Moulton,
Advances in Applied Mathematics, 49(1), 2012, 39-56.
[146]
Recognizing treelike k-dissimilarities,
S.Herrmann, K.Huber, V.Moulton, A.Spillner,
Journal of Classification, 29(3), 2012, 321-340.
[145]
Reducing sequencing bias of small RNAs,
K.Sorefan, H.Pais, A.Hall, A.Kozomara, S.Griffith-Jones, V.Moulton, T.Dalmay,
Silence, 2012, 3:4
[144]
Trees, tight-spans and point configurations,
S.Herrmann, V.Moulton,
Discrete Mathematics, 312(16), 2012, 2506-2521.
[143]
Injective optimal realizations of finite metric spaces,
J.Koolen, A.Lesser, V.Moulton, T.Wu,
Discrete Mathematics, 312(10), 2012, 1602-1610.
[142]
FiRePat - Finding Regulatory Patterns between sRNAs and
putative target genes,
I.Mohorianu, S.Lopez-Gomollon, F.Schwach, T.Dalmay, V.Moulton,
WIREs Data Mining and Knowledge Discovery, 2, 2012, 273-284.
[141]
Optimal algorithms for computing edge weights in planar split-networks,
A.Spillner, V.Moulton,
Journal of Applied Mathematics and Computing,
39(1-2), 2012, 1-13.
[140]
Activation of the innate immune response and interferon signalling in myotonic dystrophy
type 1 and type 2 cataracts,
J.Rhodes, M.Lott, S.Russell, V.Moulton, J.Sanderson, M.Wormstone, D.Broadway,
Human Molecular Genetics, 21(4), 2012, 852-862.
[139]
Constructing and drawing planar split networks,
A.Spillner, B.Nguyen, V.Moulton,
IEEE/ACM Transactions on Computational Biology and Bioinformatics, 9(2), 2012, 395-407.
[138]
Computing evolutionary distinctiveness indices in large scale analysis,
I.Martyn, T.Kuhn, A.Mooers, V.Moulton, A.Spillner,
Algorithms for Molecular Biology 2012, 7:6.
2011
[137]
Blocks and cut vertices of the Buneman Graph,
A.Dress, K.Huber, J.Koolen, V.Moulton,
SIAM Journal on Discrete Mathematics, 25, 2011, 1902-1919.
[136]
Profiling of short RNAs during fleshy fruit development reveals
stage-specific sRNAome expression patterns,
I.Mohorianu, R.Jing, F.Schwach, S.Lopez-Gomollon,
G.Szittya, S.Moxon, K.Sorefan, V.Moulton, T.Dalmay,
Plant Journal, 67(2), 232-246, 2011.
[135]
mRNA expression profiling reveals conserved and non-conserved miR-140 targets,
F.Nicolas, H.Pais, F.Schwach, M.Lindow, S.Kauppinen, V.Moulton, T.Dalmay,
RNA Biology, 8(4), 607-615, 2011.
[134]
Metrics on multi-labeled
trees: Interrelationships and diameter bounds,
K.Huber, A.Spillner, R.Suchecki, V.Moulton,
IEEE/ACM Transactions on Computational Biology and Bioinformatics,
8(4), 1029-40, 2011.
[133]
A 'non-additive' characterization of p-adic norms,
A.Dress, J.Kahrstrom, V.Moulton,
Annals of Combinatorics, 15, 37-50, 2011.
[132]
Identifying and reconstructing lateral transfers from
evolutinary distances by applying the Minimum Contradiction
Method to Neighbor-Net,
M.Thuillard, V.Moulton,
Journal of Bioinformatics and Computational Biology,
9(4), 453-470, 2011.
2010
[131]
Species, Clusters and the 'Tree of Life': A graph-theoretic perspective,
A.Dress, V.Moulton, M.Steel, T.Wu,
Journal of Theoretical Biology, 265(4), 535-42, 2010.
[130]
RDP3: A flexible and fast computer program for analysing recombination,
D.Martin, P.Lemey, M.Lott, V.Moulton, D.Posada, P.Lefeuvre,
Bioinformatics, 26(19), 2462-2463, 2010.
[129]
Identification of grapevine microRNAs and their targets using high throughput
sequencing and degradome analysis,
V.Pantaleo, G.Szittya, S.Moxon, L.Miozzi, V.Moulton, T.Dalmay, J.Burgyan,
Plant Journal, 62(6), 960-976, 2010.
[128]
Endogenous short RNAs generated by Dicer 2 and RNA-dependent RNA polymerase 1 regulate mRNAs in the basal
fungus Mucor circinelloides,
F.Nicolas, S.Moxon, J.Haro, S.Calo, I.Grigoriev,
S.Torres-Martinez, V.Moulton, R.Ruiz-Vazquez, T.Dalmay,
Nucleic Acids Research, 38(16), 5535-5541, 2010.
[127]
An algorithm for computing cutpoints in finite metric spaces,
A.Dress, K.Huber, J.Koolen, V.Moulton, A.Spillner,
Journal of Classification, 27(2), 158-172, 2010.
[126]
Analysing mRNA expression identifies Smad3 as a microRNA-140 target
regulated only at protein level,
H.Pais, F.Nicolas, S.Soond, T.Swingler, I.Clark, A.Chantry, V.Moulton, T.Dalmay, RNA,
16, 489-494, 2010.
[125]
Finding sRNA generative locales from high-throughput sequencing data with NiBLS,
D.MacLean, V.Moulton, D.Studholme,
BMC Bioinformatics, 2010, 11:93.
[124]
Distinguishing between hot-Spots and melting-pots of genetic diversity,
B.Nguyen, A.Spillner, B.Emerson, V.Moulton,
Algorithms in Molecular Biology, 2010, 5:19.
[123]
Structural and functional analysis of viral siRNAs,
G.Szittya, S.Moxon, V.Pantaleo, G.Toth, R.Pilcher, V.Moulton, J.Burgyan, T.Dalmay,
PLoS Pathogens, 2010, 6(4): e1000838.
2009
[122]
Detecting recombination and identifying hybrids in viral sequence
alignments using a quartet scanning approach,
P.Lemey, M.Lott, D.Martin, V.Moulton,
BMC Bioinformatics, 2009, 10:126.
[121]
There are finitely many regular near polygons
and geodetic distance-regular graphs with fixed valency,
S.Bang, J.Koolen, V.Moulton,
Journal fur die reine und angewandte Mathematik, 635, 2009, 213-235.
[120]
The maximum coverage problem and strongly greedy hypergraphs,
V.Moulton, A.Spillner,
Applied Mathematics Letters, 22(10), 2009, 1496-1499.
[119]
Barriers in metric spaces,
A.Dress, V.Moulton, A.Spillner, T.Wu,
Applied Mathematics Letters, 22(8), 2009, 1150-1153.
[118]
PADRE: A Package for
Analyzing and Displaying Reticulate Evolution,
M.Lott, A.Spillner, K.Huber, V.Moulton,
Bioinformatics, 25, 2009, 1199-1200.
[117]
Optimal realizations of generic 5-point metrics,
J.Koolen, A.Lesser, V.Moulton,
European Journal of Combinatorics, 30(5), 2009, 1164-1171.
[116]
Consistency of the QNet algorithm for generating
planar split graphs from weighted quartets,
S.Gruenewald, V.Moulton, A.Spillner,
Discrete Applied Mathematics, 157(10), 2009, 2325-2334.
[115]
Characterizing weak compatibility in terms of weighted quartets,
S.Gruenewald, K.Huber, V.Moulton, C. Semple, A. Spillner,
Advances in Applied Mathematics, 42, 2009, 329-341.
[114]
Inferring polyploid phylogenies from multiply-labeled gene trees,
M.Lott, A.Spillner, K.Huber, A.Petri, B.Oxelman, V.Moulton,
BMC Evolutionary Biology, 2009, 9:216.
[113]
High throughput sequencing of microRNAs in chicken somites,
T.Rathjen, H.Pais, D.Sweetman, V.Moulton, A.Munsterberg, T.Dalmay,
FEBS Letters, 583(9), 2009, 1422-1426.
[112]
Consistency of phylogenetic tree search algorithms based on the
Balanced Minimum Evolution principle,
M.Bordewich, O.Gascuel, K.Huber, V.Moulton,
IEEE/ACM Transactions on Computational Biology and Bioinformatics, 6(1), 2009, 110-117.
[111]
Maximum parsimony for tree mixtures,
S.Gruenewald, V.Moulton,
IEEE/ACM Transactions on Computational Biology and Bioinformatics, 6(1), 2009, 97-102.
[110]
Refining phylogenetic trees given additional data:
Algorithms based on parsimony,
T.Wu, V.Moulton, M.Steel,
IEEE/ACM Transactions on Computational Biology and Bioinformatics, 6(1), 2009, 118-125.
[109]
A graph-theoretical invariant of topological spaces,
A.Dress, K.Huber, J.Koolen, V.Moulton,
Applied Mathematics Letters 22(2), 2009, 159-162.
2008
[108]
Experimental identification of microRNA-140 targets by suppressing and
over-expressing microRNA-140,
F.Molina, H.Pais, F.Schwach, M.Lindow, S.Kauppinen, V.Moulton, T.Dalmay,
RNA, 14, 2008, 2513-2520.
[107]
Using supernetworks to distinguish hybridization from lineage-sorting,
B.Holland, S.Benthin, P.Lockhart, V.Moulton, K.Huber,
BMC Evolutionary Biology, 2008, 8:202.
[106]
Block realizations of finite metrics and the tight-span construction I: The
embedding theorem,
A.Dress, K.Huber, J.Koolen, V.Moulton,
Applied Mathematics Letters, 21(12), 2008, 1306-1309.
[105]
The complexity of deriving multi-labeled trees from bipartitions,
K.Huber, M.Lott, V.Moulton, A.Spillner,
Journal of Computational Biology, 15(6), 2008, 639-651.
[104]
High-throughput sequencing of Medicago truncatula short RNAs,
G.Szittya, S.Moxon, D.Santos, R.Jing, M.Fevereiro, V.Moulton, T.Dalmay,
BMC Genomics, 2008, 9:593.
[103]
A toolkit for analysing large-scale plant small RNA datasets,
S.Moxon, F.Schwach, D.MacLean, T.Dalmay, D.Studholme, V.Moulton,
Bioinformatics, 24, 2008, 2252 - 2253.
[102]
Deep sequencing of tomato short RNAs identifies microRNAs targeting genes
involved in fruit ripening,
S.Moxon, R.Jing, G.Szittya, F.Schwach, R.Pilcher, V.Moulton, T.Dalmay,
Genome Research, 18, 2008, 1602-1609.
[101]
Cut points in metric spaces,
A.Dress, K.Huber, J.Koolen, V.Moulton,
Applied Mathematics Letters, 21(6), 2008, 545-548.
[100]
Characterizing cell-decomposable metrics,
K.Huber, J.Koolen, V.Moulton, A.Spillner,
The Electronic Journal of Combinatorics, 15(1), 2008, N7.
[99]
Compatible decompositions and block realizations of finite metrics,
A.Dress, K.Huber, J.Koolen, V.Moulton,
European Journal of Combinatorics, 29(7), 2008, 1617-1633.
[98]
A scoring matrix approach to detecting miRNA target sites,
S.Moxon, V.Moulton, J.Kim,
Algorithms in Molecular Biology, 2008, 3:3.
[97]
Exploring contradictory phylogenetic relationships in yeast,
Q.Wu, S.James, I.Roberts, V.Moulton, K.Huber,
FEMS Yeast Research, 8(4), 2008, 641-650.
[96]
A regular decomposition of the edge-product space
of phylogenetic trees,
J.Gill, S.Linusson, V.Moulton, M.Steel,
Advances in Applied Mathematics, 41, 2008, 158-176.
[95]
Computing phylogenetic diversity for split systems,
A.Spillner, B.Nguyen, V.Moulton,
IEEE/ACM Transactions on Computational Biology and Bioinformatics, 5, 2008, 235-244.
[94]
Counting vertices and cubes in median graphs associated to circular split systems,
Y.Choe, J.Koolen, K.Huber, V.Moulton, Y.Won,
European Journal of Combinatorics, 29(2), 2008, 443-456.
[93]
Encoding phylogenetic trees in terms of weighted quartets,
S.Gruenewald, K.Huber, V.Moulton, C.Semple,
Journal of Mathematical Biology, 56(4), 2008, 465-477.
2007
[92] Boltzmann probability of RNA
structural neighbors and riboswitch detection,
E.Freyhult, V.Moulton, P.Clote,
Bioinformatics, 23, 2007, 2054-2062.
[91]
Concerning the relationship between
realizations and tight spans of finite metrics,
A.Lesser, J.Koolen, V.Moulton,
Discrete and Computational Geometry, 38, 2007, 605-614.
[90]
Two theorems concerning the Bannai Ito Conjecture,
S.Bang, J.Koolen, V.Moulton,
European Journal of Combinatorics, 28(7), 2007, 2026-2052.
[89] RNAbor: A web server for RNA structural neighbors,
E.Freyhult, V.Moulton, P.Clote,
Nucleic Acids Research, 35, 2007, W305 - W309.
[88]
Estimating parameters for generalized mass action models
using constraint propagation,
W.Tucker, Z.Kutalik, V.Moulton,
Mathematical Biosciences, 208(2), 2007, 607-620.
[87]
Identification of novel short RNAs in tomato (Solanum lycopersicum),
R.Rusholme, S.Moxon, N.Pakseresht, V.Moulton, K.Mannington, G.Seymour, T.Dalmay,
Planta, 3, 2007, 709-717.
[86]
Consistency of the Neighbor-Net algorithm,
D.Bryant, V.Moulton, A.Spillner,
Algorithms in Molecular Biology, 2007, 2:8.
[85]
S-system parameter estimation for noisy metabolic profiles using Newton-flow
analysis,
Z.Kutalik, W.Tucker, V.Moulton,
IET Systems Biology, 1, 2007, 174-180.
[84]
Some uses of the Farris Transform in mathematics and
phylogenetics - A review,
A.Dress, K.Huber, V.Moulton,
Annals of Combinatorics, 11, 2007, 1-37.
[83]
Untangling complex histories of genome mergings in high polyploids,
A.Brysting, B.Oxelman, K.Huber, V.Moulton, C.Brochmann,
Systematic Biology, 56, 2007, 467-476.
[82]
Optimizing phylogenetic diversity under constraints,
V.Moulton, C.Semple, M.Steel,
Journal of Theoretical Biology, 246, 2007, 186-194.
[81]
Imputing supertrees and supernetworks from quartets,
B.Holland, G.Conner, K.Huber, V.Moulton,
Systematic Biology, 56, 2007, 57-67.
[80]
QNet: An agglomerative method for the construction of
phylogenetic networks from weighted quartets,
S.Gruenewald, K.Forslund, A.Dress, V.Moulton,
Molecular Biology and Evolution, 24, 2007, 532-538.
2006
[79]
Reconstructing the evolutionary history of
polyploids from multi-labelled trees,
K.Huber, B.Oxelman, M.Lott, V.Moulton,
Molecular Biology and Evolution, 23, 2006, 1784-1791.
[78]
Hereditarily optimal realizations of consistent metrics,
A.Dress, K.Huber, A.Lesser, V.Moulton,
Annals of Combinatorics, 10, 2006, 63-67.
[77]
Parameter reconstruction for biochemical networks using interval analysis,
W.Tucker, V.Moulton,
Reliable Computing, 12(5), 2006, 1-14.
[76] Improved consensus network techniques for genome-scale phylogeny,
B.Holland, L.Jermiin, V.Moulton,
Molecular Biology and Evolution, 23, 2006, 848-855.
[75]
Phylogenetic networks from multi-labeled trees,
K.Huber, V.Moulton,
Journal of Mathematical Biology, 52(5), 2006, 613-632.
[74]
Visualizing bacterial tRNA identity determinants and
antideterminants using function logos and inverse function logos,
E.Freyhult, V.Moulton, D.Ardell,
Nucleic Acids Research, 34(3), 2006, 905-916.
[73]
On the structure of the tight-span of a totally split-decomposable metric,
K.Huber, J.Koolen, V.Moulton,
European Journal of Combinatorics, 27, 2006, 461-479.
2005
[72]
The tight span of an antipodal metric space:
Part I - Combinatorial properties,
K.T.Huber, J.H.Koolen, V.Moulton,
Discrete Mathematics, 303, 2005, 65-79.
[71]
A comparison of RNA folding measures,
E.Freyhult, P.Gardner, V.Moulton,
BMC Bioinformatics, 2005, 6:241.
[70]
Bounding the number of hybridisation events for a
consistent evolutionary history,
M.Baroni, S.Grunewald, V.Moulton, Charles Semple,
Journal of Mathematical Biology, 51, 2005, 171-182.
[69]
Four characters suffice to convexly define a phylogenetic tree,
K.Huber, V.Moulton, M.Steel,
SIAM Journal on Discrete Mathematics, 18(4), 2005, 835-843.
[68]
Predicting RNA structure using mutual information,
E.Freyhult, V.Moulton, P.Gardner,
Applied Bioinformatics, 4, 2005, 53-59.
[67]
Visualizing conflicting evolutionary hypotheses in large
collections of trees using consensus networks,
B.Holland, F.Delsuc, V.Moulton,
Systematic Biology, 54, 2005, 66-76.
[66]
Biogeographic interpretation of split graphs: Least
squares optimization of edge lengths,
R.Winkworth, D.Bryant, P.Lockhart, D.Havell, V.Moulton,
Systematic Biology, 54, 2005, 56-65.
[65]
Unbiased descriptor and parameter selection confirms
the potential of proteochemometric modelling,
E.Freyhult, P.Prusis, M.Lapinsh, J.Wikberg, V.Moulton, M.Gustafsson,
BMC Bioinformatics, 2005, 6:50.
[64]
Tracking down noncoding RNAs,
V.Moulton, PNAS, 7, 2005, 2269-2270.
[63]
Recovering a phylogenetic tree using pairwise closure operations,
K.Huber, V.Moulton, C.Semple, M.Steel,
Applied Mathematics Letters, 18, 2005, 361-366.
[62]
The MinMax Squeeze: Guaranteeing a minimal tree for population data,
B.Holland, K.Huber, D.Penny, V.Moulton,
Molecular Biology and Evolution, 22, 2005, 235-242.
[61]
4n-10,
A.Dress, J.Koolen, V.Moulton,
Annals of Combinatorics, 8, 2005, 463-471.
[60]
Delta-additive and Delta-ultra-additive
maps, Gromov's trees, and the Farris transform,
A.Dress, B.Holland, K.T.Huber, J.H.Koolen,
V.Moulton, J.Weyer-Menkhoff,
Discrete Applied Mathematics, 146, 2005, 51-73.
2004
[59]
VisRD - Visual Recombination Detection,
K.Forslund, D.Huson, V.Moulton,
Bioinformatics, 20, 2004, 3654-3655.
[58]
Peeling phylogenetic 'oranges',
V.Moulton, M.Steel,
Advances in Applied Mathematics, 33(4), 2004, 710-727.
[57]
Using consensus networks to visualize contradictory
evidence for species phylogeny,
B.Holland, K.Huber, V.Moulton, P.Lockhart,
Molecular Biology and Evolution, 21, 2004, 1459-1461.
[56]
Replacing cliques by stars in quasi-median graphs,
K.Huber, V.Moulton, C.Semple,
Discrete Applied Mathematics, 143, 2004, 194-203.
[55]
Phylogenetic analysis of the full-length SARS-CoV sequences:
Evidence for phylogenetic discordance in three genomic regions,
G.Magiorkinis, E.Magiorkinis, D.Paraskevis, A.M. Vandamme,
M. Van Ranst, V. Moulton, A.Hatzakiu,
Journal of Medical Virology, 74(3), 2004, 369-372.
[54]
There are finitely many triangle-free distance-regular
graphs with degree 8, 9 or 10,
J.Koolen, V.Moulton, Journal of Algebraic Combinatorics, 19, 2004, 205-217.
[53]
The tight span of an antipodal metric space:
Part II - Geometrical properties,
K.T.Huber, J.H.Koolen, V.Moulton,
Discrete and Computational Geometry, 31, 2004, 567-586.
[52]
NeighborNet: An agglomerative method for the
construction of phylogenetic networks,
D.Bryant, V.Moulton,
Molecular Biology and Evolution, 21, 2004, 255-265.
[51]
The structure of spherical graphs,
J.Koolen, V.Moulton, D.Stevanovic,
European Journal of Combinatorics, 25, 2004, 213-227
2003
[50]
Mosaic genomes of the six major Primate lentivirus lineages
revealed by phylogenetic and split-decomposition analyses,
M.Salemi, T. De Oliveira, V. Courgnaud, V.Moulton,
B.Holland, S.Cassol, M.Peeters, A.-M. Vandamme,
Journal of Virology, 77, 2003, 7202-7213.
[49]
A bound for the number of columns l(c,a,b)
in the intersection array of a distance-regular graph,
S.Bang, J.Koolen, V.Moulton, European Journal of Combinatorics,
24, 2003, 785-795.
[48]
New exploratory methods for visual recombination detection,
K.Strimmer, K.Forslund, B.Holland, V.Moulton,
Genome Biology, 4, 2003, R33.
[47]
Optimal alphabets for an RNA world,
P. Gardner, B.Holland, V.Moulton, M.Hendy, D.Penny,
The Royal Society Proceedings: Biological Sciences,
270, 2003, 1177-1182.
[46]
A search for noncoding RNAs using
predicted MFE secondary structures,
S.Edvardsson, P.P. Gardner, A.M.Poole,
M.D.Hendy, D.Penny, V.Moulton,
Bioinformatics, 19, 2003, 865-873.
[45]
Maximal energy bipartite graphs,
J.Koolen, V.Moulton,
Graphs and Combinatorics, 19(1), 2003, 131-135.
[44]
Connectivity calculus,
D.Cieslik, A.Dress, K.T.Huber, V.Moulton,
Applied Mathematics Letters, 16, 2003, 395-399.
2002
[43]
Embedding complexity and discrete optimization I:
A new divide & conquer approach to discrete optimization,
D.Cieslik, A.Dress, K.T.Huber, V.Moulton,
Annals of Combinatorics, 6, 2002, 257-273.
[42]
Embedding complexity and discrete optimization II:
A dynamical programming approach to the Steiner-Tree Problem,
D.Cieslik, A.Dress, K.T.Huber, V.Moulton,
Annals of Combinatorics, 6, 2002, 275-283.
[41]
The relation graph,
K.Huber, V.Moulton,
Discrete Mathematics,
244, 2002, 153-166.
[40]
Antipodal metrics and split systems,
A.Dress, K.Huber, V.Moulton,
European Journal of Combinatorics,
23, 2002, 187-200.
[39]
Quasi-median graphs from sets of partitions,
H.-J. Bandelt, K.T.Huber, V.Moulton,
Discrete Applied Mathematics,
122, 2002, 23-35.
[38]
An explicit computation of the injective hull
of certain finite metric spaces in terms of their
associated Buneman complex,
A.Dress, K.Huber, V.Moulton,
Advances in Mathematics,
168, 2002, 1-28.
[37]
Hyperbolic bridged graphs,
J.Koolen, V.Moulton,
European Journal of Combinatorics,
23, 2002, 683-699.
[36]
Delta-plots: A tool for the analysis of
phylogenetic distance data,
B.Holland, K.Huber, A.Dress, V.Moulton,
Molecular Biology and Evolution,
19, 2002, 2051-2059.
[35]
On a conjecture of Bannai and Ito: There
are finitely many distance-regular graphs
with degree 5, 6 or 7,
J.Koolen, V.Moulton,
European Journal of Combinatorics,
23, 2002, 987-1006.
[34]
Spectronet: A package for computing spectra and median networks,
K.T.Huber, M.Langton, D.Penny, V.Moulton, M.Hendy,
Applied Bioinformatics,
1, 2002, 159-161.
[33]
On line arrangements in the hyperbolic plane,
A.Dress, J.Koolen, V.Moulton,
European Journal of Combinatorics,
23, 2002, 549-557. (see also Addendum,
European Journal of Combinatorics, 24, 2003, 347).
2001
[32]
Maximal energy graphs,
J.Koolen, V.Moulton, Advances in Applied Mathematics,
26, 2001, 47-52.
[31]
Recombination analysis using directed graphical models,
K.Strimmer, C.Wiuf, V.Moulton,
Molecular Biology and Evolution, 18, 2001, 97-99.
[30]
Totally decomposable metrics of combinatorial dimension two,
A.Dress, K.Huber, V.Moulton, Annals of Combinatorics,
5, 2001, 99-112.
[29]
Pruned median networks: a technique for reducing
the complexity of median networks,
K.Huber, V.Moulton, P.Lockhart, A.Dress,
Molecular Phylogenetics and Evolution,
19 (2), 2001, 302-310.
[28]
On the hyperbolicity of chordal graphs,
G.Brinkmann, J.Koolen, V.Moulton,
Annals of Combinatorics,
5, 2001, 61-69.
[27]
Six points suffice: How to check
for metric consistency,
A.Dress, K.Huber, J.Koolen, V.Moulton,
European Journal of Combinatorics,
22, 2001, 465-474.
[26]
2nk-{(2k+1) choose 2}: A Note on
Extremal Combinatorics of Cyclic Split Systems,
A.Dress, M.Klucznik, J.Koolen, V.Moulton,
Seminaire Lotharingien de Combinatoire, 47, 2001
(http://www.mat.univie.ac.at/~slc).
2000
[25]
Evolutionary rate and genetic drift
of hepatitis C virus are poorly correlated
with the host immune response: studies
of infected donor-recipient clusters,
J.-P. Allain, Y.Dong, A.-M. Vandamme, V.Moulton, M.Salemi,
Journal of Virology,
74(6), Mar. 2000, 2541-25.
[24]
Likelihood analysis of phylogenetic networks using directed
graphical models,
K.Strimmer, V.Moulton,
Molecular Biology and Evolution,
17(6), 2000, 875-881.
[23]
Estimating and approximating the total pi-electron
energy of benzenoid hydrocarbons,
I. Gutman, J.Koolen, V.Moulton, M.Parac, T.Soldatovic, D.Vidovic,
Zeitschrift fur Naturforschung,
55a, 2000, 507-512.
[22]
On the tight span of an antipodal graph,
O.Goodmann, V.Moulton,
Discrete Mathematics,
218, 2000, 73-96.
[21]
More hyperenergetic molecular graphs,
J.Koolen, V.Moulton, I.Gutman, D.Vidovic,
Journal of the Serbian Chemical Society,
65(8), 2000, 571-575.
[20]
Affine maps that induce polytopal complex isomorphisms,
A.Dress, K.Huber, V.Moulton,
Discrete and Computational Geometry,
24, 2000, 49-60.
[19]
A classification of the six-point prime metrics,
J.Koolen, V.Moulton, U.Toenges,
European Journal of Combinatorics,
21, 2000, 815-829.
[18]
Use of RNA secondary structure for studying the evolution
of RNase P and RNase MRP,
L.Collins, V.Moulton, D.Penny,
Journal of Molecular Evolution,
51, 2000, 194-204.
[17]
RNA folding argues against a hot-start origin of life,
V.Moulton, G.Jameson, P.Gardner, L.Creamer, R.Pointon, D.Penny,
Journal of Molecular Evolution,
51, 2000, 416-421.
Mathematics, Editor's Choice, 1999 Edition.
[16]
Improving the McClelland inequality for total pi-electron energy,
J.Koolen, V.Moulton, I.Gutman,
Chemical Physics Letters,
320/3-4, 2000, 213-216.
[15]
Metrics on RNA secondary structures,
V.Moulton, M.Zuker, M.Steel, R.Pointon, D.Penny,
Journal of Computational Biology,
7, 2000, 277-292.
[14]
An exceptional split geometry,
A.Dress, K.Huber, V.Moulton,
Annals of Combinatorics,
4, 2000, 1-11.
1999
[13]
A polynomial time algorithm for constructing the refined Buneman tree,
D.Bryant, V.Moulton,
Applied Mathematics Letters,
12, 1999, 51-56.
[12]
Retractions of finite distance functions onto tree metrics,
V.Moulton, M.Steel,
Discrete Applied Mathematics, 91, 1999, 215-233. Also appearing
in Discrete Applied Mathematics, Editor's Choice, 1999 Edition.
1998
[11]
Hopf-Braid groups,
V.Moulton,
Journal of Knot Theory and its Ramifications,
7, No. 8, 1998, 1107-1117.
[10]
A comparison between the median and the tight-span completion
of finite split systems,
A.Dress, K.Huber, V.Moulton,
Annals of Combinatorics,
2, 1998, 299-311.
[9]
The coherency index,
J.Koolen, V.Moulton, U.Toenges,
Discrete Mathematics,
192, 1998, 205-222.
[8]
Vector braids,
Journal of Pure and Applied Algebra,
V.Moulton,
131, 1998, 245-296.
1997
[7]
A note on the uniqueness of coherent decompositions,
J.Koolen, V.Moulton,
Advances in Applied Mathematics,
19, 1997, 444-449.
[6]
DCA: An efficient implementation of the divide-and-conquer
approach to simultaneous multiple sequence alignment,
J.Stoye, V.Moulton, A.Dress,
Computer Applications in the Biosciences,
13, 1997, 625-626.
[5]
On the number of vertices and edges of the Buneman graph,
A.Dress, M.Hendy, K.Huber, V.Moulton,
Annals of Combinatorics,
1, 1997, 329-337.
[4]
Some variations on a theme by Buneman,
A.Dress, K.Huber, V.Moulton,
Annals of Combinatorics,
1, 1997, 339-352.
[3]
Trees, taxonomy and strongly compatible multi-state characters,
A.Dress, V.Moulton, M.Steel,
Advances in Applied Mathematics,
19, 1997, 1-30.
1996
[2]
T-Theory,
A.Dress, V.Moulton, W.Terhalle,
The European Journal of Combinatorics,
17, 1996, 161-175.
[1]
Analyzing and visualizing
sequence and distance data using SplitsTree,
A.Dress, D.Huson, V.Moulton,
Discrete Applied Mathematics,
71, 1996, 95-110.
Papers in Refereed Conference Proceedings
[15]
Reconstructing the history of syntenies through Super-Reconciliation,
M.Delabre, N.El-Mabrouk, K.Huber, M.Lafond, V.Moulton, E.Noutahi,
M.Sautie Castellanos,
Proceedings of 16th RECOMB Comparative Genomics Satellite Workshop, in press.
[14]
From event-labeled gene trees to species trees,
M.Hernandez-Rosales, M.Hellmuth, N.Wieseke, K.Huber, V.Moulton, P.Stadler,
Proceedings of the Tenth Annual Research in Computational
Molecular Biology (RECOMB) Satellite
Workshop on Comparative Genomics, BMC Bioinformatics, 2012, 13 (Suppl 19):S6
[13]
Computing a consensus of multilabeled trees,
K.T.Huber, V.Moulton, A.Spillner, S.Storandt, R.Suchecki,
Algorithm Engineering and Experiments (ALENEX12), SIAM, 84-92, 2012.
[12]
Constructing phylogenetic supernetworks from quartets,
S.Gruenewald, A.Spillner, K.Forslund, V.Moulton,
WABI 2008,
Lecture Notes in Computer Science 5251,
Springer Berlin/Heidelberg, 2008, 284-295.
[11]
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